Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,807,437 – 6,807,549 |
Length | 112 |
Max. P | 0.500000 |
Location | 6,807,437 – 6,807,549 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 91.07 |
Mean single sequence MFE | -25.38 |
Consensus MFE | -18.52 |
Energy contribution | -19.27 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.73 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6807437 112 - 27905053 GAAAAUGUUGAGUAAAUUUGAAGAAAGUUUGCAGUAUUGCCGCAAAGAUUAUUCAGAUAAGAUAAUAAAUAAGAAAGGCCAACAUGGCGUAUGCGUCAUACUUGUCUUGCUC .........((((..(((((((.....(((((.(.....).))))).....)))))))(((((((............(((.....)))(((((...)))))))))))))))) ( -24.20) >DroSec_CAF1 65705 112 - 1 GAAAAAGUUGAGUAAAUUUGGAAAAAGUUGGCAGUAUUGCCGCAAAGAUUAUUUAGAUAAGAUAAUAAAUAAGCAAGGCCAACAUGGCGUAUGCGUAAUACUUGUCUUGCUC .........((((((.(((....)))...(((((((((((.......(((((((.....)))))))......((((.(((.....))).).)))))))))).)))))))))) ( -25.70) >DroSim_CAF1 71266 112 - 1 GAAAAUGUUGAGUAAAUUUGGAAAAAGUUUGCAGUAUUGCCGCAAAGAUUAUUUAGAUAAGAUAAUAAAUAAGCAAGGCCAACAUGGCGGAUGCGUAAUACUUGCCUUGCUC .........((((((.(((....)))....((((((((((.(((...(((((((.....)))))))...........(((.....)))...)))))))))).))).)))))) ( -24.50) >DroEre_CAF1 51414 112 - 1 GAAAAUGUUGCGUAAAUUUGGAAAAAGUUUGCAGUAUUGCCGCAAAUAUUAUUCAGAUAAGAUAAUAAAUAAGCACGGCCAACAUGGCGGAUGGGUAAUACCAGCCCCCAUC ......((((.((((((((.....)))))))).((((((((((...(((((((.......))))))).....)).(.(((.....))).)...))))))))))))....... ( -27.10) >consensus GAAAAUGUUGAGUAAAUUUGGAAAAAGUUUGCAGUAUUGCCGCAAAGAUUAUUCAGAUAAGAUAAUAAAUAAGCAAGGCCAACAUGGCGGAUGCGUAAUACUUGCCUUGCUC ...........((((((((.....)))))))).(((((((.(((...((((((.......))))))...........(((.....)))...))))))))))........... (-18.52 = -19.27 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:19 2006