Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,806,150 – 6,806,246 |
Length | 96 |
Max. P | 0.541903 |
Location | 6,806,150 – 6,806,246 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.50 |
Mean single sequence MFE | -30.22 |
Consensus MFE | -14.73 |
Energy contribution | -16.80 |
Covariance contribution | 2.07 |
Combinations/Pair | 1.20 |
Mean z-score | -1.61 |
Structure conservation index | 0.49 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541903 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6806150 96 + 27905053 AUGCGGUGACAUGUCCUC---UGAA------------------GAUGGGACGUGACCGGGAUGAGGAUCAAGCAGUGCUCAGUGCAGCAUUACUUUGUAU---CUCUGAUCCAGGCAAAU .((((((..((((((((.---....------------------...))))))))))).((((.(((((((((.((((((......)))))).).))).))---).)).))))..)))... ( -33.80) >DroSec_CAF1 64444 75 + 1 AUGCG------------------------------------------GGACGUGACCGGGAUGAGGAUCAAGCAGUGCUCAGUGCAGCAUUACUUUGUAU---CUCUGAUCCAGGCAAAU .((((------------------------------------------(.......)).((((.(((((((((.((((((......)))))).).))).))---).)).))))..)))... ( -22.10) >DroSim_CAF1 69982 96 + 1 AUGCGGUGACAUGUCCCC---UGAA------------------GAAGGGACGUGACCGGGAUGAGGAUCAAGCAGGGCUCAGUGCAGCAUUACUUUGUAU---CUCUGAUCCAGGCAAAU .((((((..((((((((.---....------------------...))))))))))).((((.(((((((((....(((......))).....)))).))---).)).))))..)))... ( -32.80) >DroEre_CAF1 50164 99 + 1 AUGCUGUGACAUGUCCUC---UGAA------------------GGAGGAACGUGACCGGGAUGAGGAUCAAGCAGUGCUCAAUGCAGCAUUACUCUAGGUCGUCUCUGAUCCAGGCAAAU .((((....(((((((((---....------------------.)))).)))))....((((((.((((.((.((((((......))))))...)).)))).))....)))).))))... ( -30.40) >DroYak_CAF1 63014 96 + 1 AUGCGGUGACAUGUCCUC---UGAA------------------GGAGGGACGUGACCGGGAUGAGGAUCAAGCAGUGCUCAAUGCAGCAUUACUCUAGGU---CUCUGAUCCAGGCAAAU .((((((..(((((((((---....------------------.)).)))))))))).((((.((((((.((.((((((......))))))...)).)))---).)).))))..)))... ( -34.80) >DroAna_CAF1 22253 111 + 1 AUGCUUCGACAUGUUUUUCGCUAAAAAAAAAAGUAAAUGGUAAAAUAGAACGUGACCGGGAUAGGGAUCAAGGAGUGCUCACUCUGAGAUCAG------U---GGCUGUGCCAGGCAAAU .(((((...((((((((..((((..............)))).....))))))))...((.((((.((((..(((((....)))))..))))..------.---..)))).)))))))... ( -27.44) >consensus AUGCGGUGACAUGUCCUC___UGAA__________________GAAGGGACGUGACCGGGAUGAGGAUCAAGCAGUGCUCAGUGCAGCAUUACUUUGUAU___CUCUGAUCCAGGCAAAU .(((.....((((((((.............................))))))))..........((((((((.((((((......)))))).))............))))))..)))... (-14.73 = -16.80 + 2.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:16 2006