Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,803,922 – 6,804,029 |
Length | 107 |
Max. P | 0.978377 |
Location | 6,803,922 – 6,804,029 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 97.01 |
Mean single sequence MFE | -17.70 |
Consensus MFE | -15.82 |
Energy contribution | -15.82 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 0.89 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978377 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6803922 107 + 27905053 AUUAAAAAAACAUUUACUUACCCAAAAUGUAGGAAGAUAAACCACAGCAAAACAAACAUGCAAACGAAAUGAGCGGAAGCAGACUUCUGGCAUAUGAAAUGAGCAAA ................((((......((((.(((((..........(((.........)))...........((....))...))))).))))......)))).... ( -15.90) >DroSec_CAF1 62232 107 + 1 AUUAAAAAAACAUUUACUUACCCAAAAUGUAGGAAGAUAAACCACAGCAAAACAAACAUGCAAACGAAAUGAGCGGAAGCAGACUUCUGGCAUAUGAAAUGAGCAAA ................((((......((((.(((((..........(((.........)))...........((....))...))))).))))......)))).... ( -15.90) >DroSim_CAF1 67782 107 + 1 AUUAAAAAAACAUUUACUUACCCAAAAUGUAGGAAGAUAAACCACAGCAAAACAAACAUGCAAACGAAAUGAGCGGAAGCAGACUUCUGGCAUAUGAAAUGAGCAAA ................((((......((((.(((((..........(((.........)))...........((....))...))))).))))......)))).... ( -15.90) >DroEre_CAF1 47955 107 + 1 AAUAAAAAAACAUUUACUUACCCAAAAUGUAGGAAGAUAAACCACAGCAAGGCAAACAUGCAAACGGAAUGAGCGGAAGCAGCCUUCUGGCAUAUGAAAUGAGCAAA ..........(((((.(((((.......)))))...........(((.(((((...(((.........))).((....)).)))))))).......)))))...... ( -21.60) >DroYak_CAF1 60739 107 + 1 AAUAAAAAAACAUUUACUUACCCAAAAUGUAGGAAGAUAAACCACAGCAAGGCAAACAUGCAAACGGAAUGGGCGGAAGCAGACUUCUGGCAUAUGAAAUGAGCAAA ..........(((((.....((((...(((.((........)))))(((.(.....).)))........))))((((((....)))))).......)))))...... ( -19.20) >consensus AUUAAAAAAACAUUUACUUACCCAAAAUGUAGGAAGAUAAACCACAGCAAAACAAACAUGCAAACGAAAUGAGCGGAAGCAGACUUCUGGCAUAUGAAAUGAGCAAA ................((((......((((.(((((..........(((.........)))...........((....))...))))).))))......)))).... (-15.82 = -15.82 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:12 2006