Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,802,654 – 6,802,774 |
Length | 120 |
Max. P | 0.866196 |
Location | 6,802,654 – 6,802,774 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.44 |
Mean single sequence MFE | -27.68 |
Consensus MFE | -26.52 |
Energy contribution | -27.02 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.05 |
Structure conservation index | 0.96 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.866196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6802654 120 + 27905053 GUUGGCAUUGUGUGCGCAUAAUAGUCUGAAAUUAAAUCAGCGAGCGCGUGGGUAACUUAAAAUAAUAGCCAUUGCUUAUGUUUAAGUAAAAUAUGUACUUUGUGUACGAAAUAAGUGACC ...((((((.((((((((.....(.((((.......)))))(((..((((..(.(((((((.....(((....)))....))))))).)..))))..))))))))))).....)))).)) ( -28.60) >DroSec_CAF1 61035 120 + 1 GUUGGCAUUGUGUGCGCAUAAUAGUCUGAAAUUAAAUCAGCGAGCGCGUGGGUAACUUAAAAUAAUAGCCAUUGCUUAUGUUUAAGUAAAAUAUGUACUUUGUGUUCGAAAUAAGUGACC ((((((((((((....)))))).)))..............((((((((.((((((((((((.....(((....)))....)))))))........)))))))))))))........))). ( -24.80) >DroSim_CAF1 66498 120 + 1 GUUGGCAUUGUGUGCGCAUAAUAGUCUGAAAUUAAAUCAGCGAGCGCGUGGGUAACUUAAAAUAAUAGCCAUUGCUUAUGUUUAAGUAAAAUAUGUACUUUGUGUACGAAAUAAGUGACC ...((((((.((((((((.....(.((((.......)))))(((..((((..(.(((((((.....(((....)))....))))))).)..))))..))))))))))).....)))).)) ( -28.60) >DroEre_CAF1 46691 120 + 1 GUUGGCAUUGUGUGCGCAUAAUAGUCUGAAAUUAAAUCAGCGAGCGCGUGGGUAACUUAAAAUAAUAGCCAUUGCUUAUGUUUAAGUAAAAUAUGUACUUUGUGUACGAAAUAAGUGACC ...((((((.((((((((.....(.((((.......)))))(((..((((..(.(((((((.....(((....)))....))))))).)..))))..))))))))))).....)))).)) ( -28.60) >DroYak_CAF1 59489 120 + 1 GUUGGCAUUGUGUGCGCAUAAUAGUCUGAAAUUAAAUCAGCGAGCGCGUGGGUAACUUAAAAUAAUAGCCAUUGCUUAUGUUUAAGUAAAAUAUGUACUUUGUGUUCGAAAUAAGUGACC ((((((((((((....)))))).)))..............((((((((.((((((((((((.....(((....)))....)))))))........)))))))))))))........))). ( -24.80) >DroAna_CAF1 18916 120 + 1 GUUGGCAUUGUGUGCGCAUAAUAGCCUGAAAUUAAAUCAGCGAGCGCGUGGGUAACUUAAAAUAAUAGCCAUUGCUUAUGUUUAAGUAAAAUAUGUACUUUGUGUACGGAAGAACUGACC ((..(..((.((((((((.....((.(((.......)))))(((..((((..(.(((((((.....(((....)))....))))))).)..))))..))))))))))).))...)..)). ( -30.70) >consensus GUUGGCAUUGUGUGCGCAUAAUAGUCUGAAAUUAAAUCAGCGAGCGCGUGGGUAACUUAAAAUAAUAGCCAUUGCUUAUGUUUAAGUAAAAUAUGUACUUUGUGUACGAAAUAAGUGACC ...((((((.((((((((.....(.((((.......)))))(((..((((..(.(((((((.....(((....)))....))))))).)..))))..))))))))))).....)))).)) (-26.52 = -27.02 + 0.50)
Location | 6,802,654 – 6,802,774 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.44 |
Mean single sequence MFE | -20.82 |
Consensus MFE | -19.02 |
Energy contribution | -19.35 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.24 |
Structure conservation index | 0.91 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.785959 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6802654 120 - 27905053 GGUCACUUAUUUCGUACACAAAGUACAUAUUUUACUUAAACAUAAGCAAUGGCUAUUAUUUUAAGUUACCCACGCGCUCGCUGAUUUAAUUUCAGACUAUUAUGCGCACACAAUGCCAAC (((.(((((....((((.....))))..................(((....))).......))))).)))...((((...((((.......))))........))))............. ( -21.90) >DroSec_CAF1 61035 120 - 1 GGUCACUUAUUUCGAACACAAAGUACAUAUUUUACUUAAACAUAAGCAAUGGCUAUUAUUUUAAGUUACCCACGCGCUCGCUGAUUUAAUUUCAGACUAUUAUGCGCACACAAUGCCAAC (((.(((((...........(((((.......))))).......(((....))).......))))).)))...((((...((((.......))))........))))............. ( -19.60) >DroSim_CAF1 66498 120 - 1 GGUCACUUAUUUCGUACACAAAGUACAUAUUUUACUUAAACAUAAGCAAUGGCUAUUAUUUUAAGUUACCCACGCGCUCGCUGAUUUAAUUUCAGACUAUUAUGCGCACACAAUGCCAAC (((.(((((....((((.....))))..................(((....))).......))))).)))...((((...((((.......))))........))))............. ( -21.90) >DroEre_CAF1 46691 120 - 1 GGUCACUUAUUUCGUACACAAAGUACAUAUUUUACUUAAACAUAAGCAAUGGCUAUUAUUUUAAGUUACCCACGCGCUCGCUGAUUUAAUUUCAGACUAUUAUGCGCACACAAUGCCAAC (((.(((((....((((.....))))..................(((....))).......))))).)))...((((...((((.......))))........))))............. ( -21.90) >DroYak_CAF1 59489 120 - 1 GGUCACUUAUUUCGAACACAAAGUACAUAUUUUACUUAAACAUAAGCAAUGGCUAUUAUUUUAAGUUACCCACGCGCUCGCUGAUUUAAUUUCAGACUAUUAUGCGCACACAAUGCCAAC (((.(((((...........(((((.......))))).......(((....))).......))))).)))...((((...((((.......))))........))))............. ( -19.60) >DroAna_CAF1 18916 120 - 1 GGUCAGUUCUUCCGUACACAAAGUACAUAUUUUACUUAAACAUAAGCAAUGGCUAUUAUUUUAAGUUACCCACGCGCUCGCUGAUUUAAUUUCAGGCUAUUAUGCGCACACAAUGCCAAC (((..........((((.....)))).......(((((((.((((((....)))..)))))))))).......((((..(((((.......))).))......)))).......)))... ( -20.00) >consensus GGUCACUUAUUUCGUACACAAAGUACAUAUUUUACUUAAACAUAAGCAAUGGCUAUUAUUUUAAGUUACCCACGCGCUCGCUGAUUUAAUUUCAGACUAUUAUGCGCACACAAUGCCAAC (((..........((((.....)))).......(((((((.((((((....)))..)))))))))).......((((...((((.......))))........)))).......)))... (-19.02 = -19.35 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:12 2006