Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,800,144 – 6,800,243 |
Length | 99 |
Max. P | 0.648247 |
Location | 6,800,144 – 6,800,243 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.26 |
Mean single sequence MFE | -35.49 |
Consensus MFE | -23.94 |
Energy contribution | -25.81 |
Covariance contribution | 1.86 |
Combinations/Pair | 1.04 |
Mean z-score | -1.59 |
Structure conservation index | 0.67 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648247 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6800144 99 + 27905053 GGUAU-----------AUGUGUGGCUAUGGGUAUGGGUGUUGGCAAGGCUGCAGGCUCUUGCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGG-CCAGAAACGAGGAG--------- .....-----------.(((.((((((((......((((..((((((((.((((((....)))...)))))))))))..))))........)))))-)))...))).....--------- ( -37.04) >DroSec_CAF1 58761 99 + 1 GGUAU-----------AUGUGUGGCUAUGGGUAUGGGUGUUGGCAAGGCUGCAGGCUCUGGCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGG-CCAGAAUCGAGGAG--------- .....-----------...(.((((((((......((((..((((((((.((((((....)))...)))))))))))..))))........)))))-))).).........--------- ( -36.54) >DroSim_CAF1 63896 99 + 1 GGUAU-----------AUGUGUGGCUAUGGGUAUGGGUGUUGGCAAGGCUGCAGGCUCUGGCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGG-CCAGAAACGAGGAG--------- .....-----------.(((.((((((((......((((..((((((((.((((((....)))...)))))))))))..))))........)))))-)))...))).....--------- ( -36.84) >DroEre_CAF1 44013 110 + 1 GGUAUGUACAUAUAUUAUAUAUAGCUAUGGGUAUGGGUGCUGGCAAGGCUGCAGGCUCUUGCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGG-CCAGAAACGAGGAG--------- .((((((((.((((((.((((....)))))))))).))))(((((((((.....)).))))))).)))).(((((((...(((((.(....)))))-)....)))))))..--------- ( -33.50) >DroYak_CAF1 56897 99 + 1 GGUAU-----------AUAUGUGGCUAUGGGUACGGGUGCUGGCAAGGCUGCAGGCUCUUGCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGG-CCAGAAACGAGGAG--------- .....-----------...(.((((((((...((.((((..((((((((.((((((....)))...)))))))))))..))))...))...)))))-))).).........--------- ( -36.60) >DroAna_CAF1 16506 93 + 1 --------------------------GUGUGUGUCCGUA-UUGCAUUGCUGCAGGCGCUUUCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGGGGCAUGAAGGAGGAGACAGCGCAG --------------------------((((((.(((((.-(((((....)))))..))..(((..((((.((.(((((.((....)).))))).)).))))...)))))).))).))).. ( -32.40) >consensus GGUAU___________AUGUGUGGCUAUGGGUAUGGGUGUUGGCAAGGCUGCAGGCUCUUGCCAAAUGCGCUUUGUUGCCGCCAUUGUCAACAUGG_CCAGAAACGAGGAG_________ .....................((((((((......((((..((((((((.((((((....)))...)))))))))))..))))........))))).))).................... (-23.94 = -25.81 + 1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:03 2006