Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,799,715 – 6,799,831 |
Length | 116 |
Max. P | 0.999755 |
Location | 6,799,715 – 6,799,831 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 96.32 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -33.00 |
Energy contribution | -32.52 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.09 |
Mean z-score | -2.19 |
Structure conservation index | 0.99 |
SVM decision value | 4.01 |
SVM RNA-class probability | 0.999755 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6799715 116 + 27905053 AUUCCCUGCUGAUCUCUUUGAAGGCACAACGCCAAAGUGGGUCACACAGAUGAGUGGAACUUACAAUUUGUCUGCGAUUGU--GUCAGGGAUAAUAUUUCCCAUUGCCUUUGAUCAUU .........(((((........((((((((((((((((((((..(((......)))..))))))..))))...))).))))--))).((((.......)))).........))))).. ( -34.40) >DroSec_CAF1 58336 116 + 1 AUUCCCUGCUGAUCUCUUUGAAGGCACAACGCCAAAGUGGGUCACACAAAUGAGUGGAACUUACAAUUUGUCUGCGAUUGU--GUCAGGGAUAAUAUUUCCCAUUGCCUUUGAUCAUU .........(((((........((((((((((((((((((((..(((......)))..))))))..))))...))).))))--))).((((.......)))).........))))).. ( -34.40) >DroSim_CAF1 63477 116 + 1 ACUCCCUGCUGAUCUCUUUGAAGGCACAACGCCAAAGUGGGUCACACAAAUGAGUGGAACUUACAAUUUGUCUGCGAUUGU--GUCAGGGAUAAUAUUUCUCAUUGCCUUUGAUCAUU .........(((((........((((((((((((((((((((..(((......)))..))))))..))))...))).))))--))).((((.......)))).........))))).. ( -31.40) >DroEre_CAF1 43602 116 + 1 AAUCCCUACUGAUCUCUUUGAAGGCACAACGUCAAAGUGGGUCACACAAAUGAGUGGAACUUACAAUUUGUCUGCGAUUGU--GGCAGGGAUAAUAUUUCCCAUUGCCUUUGAUCAUU .........(((((.....(((((((....((((..((((((..(((......)))..))))))...(((....)))...)--))).((((.......))))..)))))))))))).. ( -32.70) >DroYak_CAF1 56462 118 + 1 AAUCCCUGCUGAUCUCUUUGAAGGCGCAACGCCAAAGUGGGUCACACAAAUGAGUGGAACUUACAAUUUGUCUGCGAUUGUGUGCCAGGGAUAAUAUUUCCCAUUGCCUUUGAUCAUU .........(((((........((((((.(((((((((((((..(((......)))..))))))..))))...)))....)))))).((((.......)))).........))))).. ( -34.50) >consensus AAUCCCUGCUGAUCUCUUUGAAGGCACAACGCCAAAGUGGGUCACACAAAUGAGUGGAACUUACAAUUUGUCUGCGAUUGU__GUCAGGGAUAAUAUUUCCCAUUGCCUUUGAUCAUU .........(((((.....(((((((((((((((((((((((..(((......)))..))))))..))))...))).))))......((((.......))))...))))))))))).. (-33.00 = -32.52 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:02 2006