Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,794,780 – 6,794,900 |
Length | 120 |
Max. P | 0.571299 |
Location | 6,794,780 – 6,794,900 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.89 |
Mean single sequence MFE | -31.67 |
Consensus MFE | -20.07 |
Energy contribution | -20.63 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.32 |
Mean z-score | -2.56 |
Structure conservation index | 0.63 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571299 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6794780 120 - 27905053 GCCUGCUAAUGAAUAGCAAGCAAUACGAAAUUACAGCCUGCCAGAGCCAAGUCAUUGAGACCUUUUUCAACCUCUGGCGGGCGAACCUCAGAUGGGUUUCACUCAUUAAUUAAUCAAAAC ((.(((((.....))))).)).....((.......(((((((((((........((((((....)))))).)))))))))))........((((((.....))))))......))..... ( -36.20) >DroSec_CAF1 53346 120 - 1 GCCUGCUAAUGAAUAGCAAGCAAUACGAAAUUACAGCCUGCCAGAGCCAAGUCAUUGAGAUCUUUUUCAACCUCUGGCGGGCGAACCUCAGAUGGGUUUCACUCAUUAAUUAAUCAAAAC ((.(((((.....))))).)).....((.......(((((((((((........((((((....)))))).)))))))))))........((((((.....))))))......))..... ( -37.10) >DroSim_CAF1 58484 120 - 1 GCCUGCUAAUGAAUAGCAAGCAAUACGAAAUUACAGCCUGCCAGAGCCAAGUCAUUGAGACCUUUUUCAACCUCUGGCGGGCGAACCUCAGAUGGGUUUCACUCAUUAAUUAAUCAAAAC ((.(((((.....))))).)).....((.......(((((((((((........((((((....)))))).)))))))))))........((((((.....))))))......))..... ( -36.20) >DroEre_CAF1 38577 120 - 1 GCCUGCUAAUGAAUAGCAAGCAAUACAAAAUUACAGCCUGCCAAAGCUAAGUCAUUGAGACCUUUUUCAACCUCUGGCUGGUGAGCCUCAGAUGGGUUUCACCCAUUAAUUAAUCAAAAC ((.(((((.....))))).))..............((..((((..((((.(...((((((....))))))...)))))))))..))....((((((.....))))))............. ( -28.80) >DroYak_CAF1 51265 120 - 1 GCCUGCUAAUGAAUAGCAAGCAAUACAAAAUUACGGCCUGCCAAAGCCAAGUCAUUGAGACCUUUUUCAACCUCUGGCGGGCGAACCUCAGAUGGGUUUCACUCAUUAAUUAAUCAAAAC ((.(((((.....))))).)).............((..((((...((((.(...((((((....))))))...))))).))))..))...((((((.....))))))............. ( -30.20) >DroAna_CAF1 11233 112 - 1 GAUUGCUAAUGAGGGU----CACCUCAAAAUUAUAAGCCUUGUUUGCUGACUCAUCAAGAGGCAACUUAACCUUUGGCUAGCGCAUAU----UGGGUUUCACUUAUUAAUUAAUAACAUC (((((.((((((((..----..))))).......((((((.((.(((.(.((..(((.((((........)))))))..)))))).))----.))))))...))).)))))......... ( -21.50) >consensus GCCUGCUAAUGAAUAGCAAGCAAUACAAAAUUACAGCCUGCCAGAGCCAAGUCAUUGAGACCUUUUUCAACCUCUGGCGGGCGAACCUCAGAUGGGUUUCACUCAUUAAUUAAUCAAAAC ((.(((((.....))))).)).................((((...(((.((...((((((....))))))...))))).)))).......((((((.....))))))............. (-20.07 = -20.63 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:52 2006