Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,794,195 – 6,794,291 |
Length | 96 |
Max. P | 0.629559 |
Location | 6,794,195 – 6,794,291 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.94 |
Mean single sequence MFE | -31.18 |
Consensus MFE | -23.08 |
Energy contribution | -23.28 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.20 |
Mean z-score | -2.31 |
Structure conservation index | 0.74 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.629559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6794195 96 - 27905053 CCAAGUGGCAAGUUUACCGAAACUUGCAAAAAAGCUG------------------------GGGGAAGCCGAACUAAAAGGAAACAGCAGCACCGGCGCCGGCAACUCCUUGUUGCAGCA .......((((((((....))))))))......((((------------------------(((....)).........(....).......)))))((..(((((.....))))).)). ( -31.30) >DroSec_CAF1 52762 96 - 1 CCAAGUGGCAAGUUUACCGAAACUUGCAAAAAAGCUG------------------------GGGGAAGUCGAACUAAAAGGAAACAGCAGCACCGGCGCCGGCAACUCCUUGUUGCAGCA .......((((((((....))))))))......((((------------------------(....((.....))....(....).......)))))((..(((((.....))))).)). ( -27.90) >DroSim_CAF1 57901 96 - 1 CCAAGUGGCAAGUUUACCGAAACUUGCAAAAAAGCUG------------------------GGGGAAGCCGAACUAAAAGGAAACAGCAGCACCGGCGCCGGCAACUCCUUGUUGCAGCA .......((((((((....))))))))......((((------------------------(((....)).........(....).......)))))((..(((((.....))))).)). ( -31.30) >DroEre_CAF1 38009 96 - 1 CCAAGUGGCAAGUUUACCGAAACUUGCAAAAAAGCUG------------------------GGGGAAGCCGAACUAAAAGGAAACAGCAGCACCGGCGCCGGCAACUCCUUGUUGCAGCA .......((((((((....))))))))......((((------------------------(((....)).........(....).......)))))((..(((((.....))))).)). ( -31.30) >DroYak_CAF1 50696 96 - 1 CCAAGUGGCAAGUUUACCGAAACUUGCAAAAAAGCUG------------------------GGGGAAGCCGAACUAAAAGGAAACAGCAGCACCGGCGCCGGCAACUCCUUGUUGCAGCA .......((((((((....))))))))......((((------------------------(((....)).........(....).......)))))((..(((((.....))))).)). ( -31.30) >DroAna_CAF1 10618 116 - 1 CCAAGUGGCAAGUUUGCCGAAACUUACAAAA-AGCUAGCAAAGUGGGCUUCGGGUGUGGGUGGAAAAACUAAACUAAAAGGAAACACC---ACUAGCGGUGGAAACUCCUUGCUAGUGCA ((...(((((....)))))..(((((((..(-((((.((...)).)))))....)))))))))................(....)..(---((((((((.(....).))..))))))).. ( -34.00) >consensus CCAAGUGGCAAGUUUACCGAAACUUGCAAAAAAGCUG________________________GGGGAAGCCGAACUAAAAGGAAACAGCAGCACCGGCGCCGGCAACUCCUUGUUGCAGCA .......((((((((....))))))))......((((........................((((..((((........(....).((.((....))))))))..))))......)))). (-23.08 = -23.28 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:51 2006