Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,793,862 – 6,793,972 |
Length | 110 |
Max. P | 0.922927 |
Location | 6,793,862 – 6,793,972 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 84.53 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -20.10 |
Energy contribution | -20.38 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -2.52 |
Structure conservation index | 0.68 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922927 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6793862 110 - 27905053 UAAAAGUCCUGGCGGGAGGAGGACAAACACAGUUGCAAGUAGCAAGUGUGUGGGACAACAAUGUUUUCCACUAAGAAAAAUAUGACAACUAGCUGAGGACAAAACGU----CAU .....((((((((.((.((((((((.(((((.((((.....)))).)))))(......)..)))))))).))...................))).))))).......----... ( -30.45) >DroSec_CAF1 52438 110 - 1 UAAAAGUCCUGGCAGGAGGAGGACAAAUACAGUUGCAAGUAGCAAGUGUGUGGGACAACAAAGUUUUCCACUUAGAAAAAUAUGACAACUAGCUGAGGACAAAAUGU----CAU .....((((((((.((.(((((((..(((((.((((.....)))).)))))(......)...)))))))..(((........)))...)).))).))))).......----... ( -28.60) >DroSim_CAF1 57577 110 - 1 UAAAAGUCCUGGCAGGAGGAGGACAAACACAGUUGCAAGUAGCAAGUGUGUGGGACAACAAUGUUUUCCACUCAGAAAAAUAUGACAACUUACUGAGGACAAAAUGU----CAU .....(((((..(((..((((((((.(((((.((((.....)))).)))))(......)..))))))))..(((........))).......)))))))).......----... ( -30.90) >DroEre_CAF1 37659 110 - 1 UAAAAGUCCAGGCAGGAGGAGGACAAACACAGUUGCAUGUAGCAAGUGUGUGGGGCAGCAAUGCUUUCCACUGAGAAAAAUGUGACAACUA-UUUAUGAU---AACGAUGGGGA .....(((((..(((..(((((.(..(((((.((((.....)))).)))))..)(((....)))))))).))).......)).)))..(((-((......---...)))))... ( -28.50) >DroYak_CAF1 50355 105 - 1 UAAAAGUCCAGGCAGGAGG-GAACAAACACAGUUGCAUGUGGCAAGUGUGUGGGGCAGCAAUGUUUUCCACUAAGAAAAAUAUGACAACUG-UUGAUGAU---GCCG----CAU ..........((((...(.-...)....((((((((((((.......(((..(((((....)))))..)))........))))).))))))-)......)---))).----... ( -29.06) >consensus UAAAAGUCCUGGCAGGAGGAGGACAAACACAGUUGCAAGUAGCAAGUGUGUGGGACAACAAUGUUUUCCACUAAGAAAAAUAUGACAACUA_CUGAGGACAAAACGU____CAU ......(((.....)))((((((((.(((((.((((.....)))).)))))(......)..))))))))............................................. (-20.10 = -20.38 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:50 2006