Locus 246

Sequence ID 3R_DroMel_CAF1
Location 959,018 – 959,110
Length 92
Max. P 0.645193
window434

overview

Window 4

Location 959,018 – 959,110
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 90.63
Mean single sequence MFE -32.10
Consensus MFE -26.92
Energy contribution -28.20
Covariance contribution 1.28
Combinations/Pair 1.17
Mean z-score -1.37
Structure conservation index 0.84
SVM decision value 0.23
SVM RNA-class probability 0.645193
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 959018 92 + 27905053
CCGGCCGAACUGAGCUGAUUCUUAAAUAAGUUGCGGCAAAUUGGCCUGCCGGCGGCCAAUUGAAUAUCCGCAUCGAUUGGGCUUAGGGCCGC
.(((((...(((((((.(.((........(.(((((..((((((((.......))))))))......))))).))).).)))))))))))). ( -35.60)
>DroSec_CAF1 5363 92 + 1
CCGGCCGAGCUGAGCUGAUCCUUAAAUAAGUUGCGGCAAAUUGGCCUGCCGGCGGCCAAUUGAAUAUCCGCAUCGAUUGGUCUUAGGGCCGC
.(((((...((((((..((((((....))).(((((..((((((((.......))))))))......)))))..)))..).)))))))))). ( -36.40)
>DroSim_CAF1 5312 92 + 1
CCGGCCGAGCUGAGCUGAUCCUUAAAUAAGUUGCGGCAAAUUGGCCUGCCGGCGGCCAAUUGAAUAUCCGCAUCGAUUGGGCUUAGGGCCGC
.(((((...((((((..((((((....))).(((((..((((((((.......))))))))......)))))..)))..).)))))))))). ( -36.40)
>DroEre_CAF1 5538 89 + 1
CCGGGCGAGU--GGUUGAUCCUUAAAUAAGUUGCG-CAAAUUGGCCUGCCGGCGGCCAAUUGAAUAUCCGCAUCGAUUGGGCUUAGGGUCGC
..(.((((.(--.(((........))).).)))).-).....(((((...(((..((((((((.........)))))))))))..))))).. ( -24.20)
>DroYak_CAF1 5439 84 + 1
------AACC--GGUUGAUCCUUAAAUAAGUUGCGGCAAAUUGGCCUGCCGGUGGCCAAUUGAAUAUCCGCAUCGAUUGGGCUUAGGGCCGC
------...(--((((((..(((....))).(((((..((((((((.......))))))))......))))))))))))(((.....))).. ( -27.90)
>consensus
CCGGCCGAGCUGAGCUGAUCCUUAAAUAAGUUGCGGCAAAUUGGCCUGCCGGCGGCCAAUUGAAUAUCCGCAUCGAUUGGGCUUAGGGCCGC
.(((((...((((((..((((((....))).(((((..((((((((.......))))))))......)))))..)))..).)))))))))). (-26.92 = -28.20 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:36 2006