Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,793,127 – 6,793,237 |
Length | 110 |
Max. P | 0.500000 |
Location | 6,793,127 – 6,793,237 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.95 |
Mean single sequence MFE | -16.98 |
Consensus MFE | -13.07 |
Energy contribution | -13.13 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.28 |
Mean z-score | -1.20 |
Structure conservation index | 0.77 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6793127 110 + 27905053 ---------AGAACUAUUCGUUCGUCCUGUCUAACUAUUUUUAAUUUUCCAAACACGUUUUCUUGGUGGAAAAAUCCUUUAAAAAAUAAAACAAGAAACCGAGAAAACAAAUAGAAAGU ---------.((((.....))))...((.((((..((....)).............((((((((((((((....)))((((.....)))).......)))))))))))...)))).)). ( -18.80) >DroSec_CAF1 51712 110 + 1 ---------ACAACAAUUCGUUCGUCCUGUCUAACUAUUUUUAAUUUUCCAAACACGUUUUCUUGGUGGAAAAAUCCUUUAAAAAAUAAAACAAGAAACCGAGAAAACAAAUAGAAAGU ---------.......((((((.(......).))).....................((((((((((((((....)))((((.....)))).......))))))))))).....)))... ( -16.10) >DroSim_CAF1 56851 110 + 1 ---------ACAACAAUUCGUUCGUCCUGUCUAACUAUUUUUAAUUUUCCAAACACGUUUUCUUGGUGGAAAAAUCCUUUAAAAAAUAAAACAAGAAACCGAGAAAACAAAUAGAAAGU ---------.......((((((.(......).))).....................((((((((((((((....)))((((.....)))).......))))))))))).....)))... ( -16.10) >DroEre_CAF1 36922 110 + 1 ---------ACAACAACUCGCUCGUGCUGUCUAACUAUUUUUAAUUUUCCAAACACGUUUUCUUGGUGGGAAAAUCCUUUAAAAAAUAAAACAAGAAACCGAGAAAACAAAUAGAAAGU ---------..........((....))................((((((.......((((((((((((((.....)))...................))))))))))).....)))))) ( -16.50) >DroYak_CAF1 49507 97 + 1 ----------------------UGAGCUGUCAAACUAUUUUUAAUUUUCCAAACACGUUUUCUUGGUGGGAAAAUCCUUUAAAAAAUAAAACAAGAAACCGAGAAAACAAACAGAAAGU ----------------------.....................((((((.......((((((((((((((.....)))...................))))))))))).....)))))) ( -15.20) >DroAna_CAF1 9568 107 + 1 GCAAUUUUCGCAGCCAUUGACUGGUCAGGACGAGUUAUUUUUAAUUUUCCAAACACGUUUCCUUGGUGGA-AAAUCCUUUAAAAAA-----------GCUAGGAAAACAAAUAAAAAGU ....(((((..(((...(((((.((....)).)))))((((((((((((((....((......)).))))-))))....)))))).-----------))).)))))............. ( -19.20) >consensus _________ACAACAAUUCGUUCGUCCUGUCUAACUAUUUUUAAUUUUCCAAACACGUUUUCUUGGUGGAAAAAUCCUUUAAAAAAUAAAACAAGAAACCGAGAAAACAAAUAGAAAGU ........................................................((((((((((((((....)))((((.....)))).......)))))))))))........... (-13.07 = -13.13 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:49 2006