Locus 2458

Sequence ID 3R_DroMel_CAF1
Location 6,792,434 – 6,792,534
Length 100
Max. P 0.717378
window4024

overview

Window 4

Location 6,792,434 – 6,792,534
Length 100
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 88.57
Mean single sequence MFE -27.64
Consensus MFE -20.65
Energy contribution -20.61
Covariance contribution -0.04
Combinations/Pair 1.04
Mean z-score -1.81
Structure conservation index 0.75
SVM decision value 0.39
SVM RNA-class probability 0.717378
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6792434 100 - 27905053
AACAAAUACGGUGGGCAUAAAUUGCGAGCAUCCCGUAUUCAGUUUGCCAUAACCAGCAUUCA------------GUUGGAGUUCAAGUUAAAGUUGAAAAUGGAAA-------UGGGAA
..........((..(((.....)))..)).((((((.((((...........(((((.....------------)))))..(((((.......)))))..)))).)-------))))). ( -23.20)
>DroSec_CAF1 51030 100 - 1
AACAAAUACAGUGGGCAUAAAUUGCGAGCAUCCCGUAUUCAGUUUGCCAUAUCCAGCAUCCU------------GUUGGAGUUCAAGUUGAAGUUGAAAAUGGAAA-------UGGGAA
..........((..(((.....)))..)).((((((.((((..........((((((.....------------)))))).(((((.......)))))..)))).)-------))))). ( -25.10)
>DroSim_CAF1 56154 100 - 1
AACAAAUACAGUGGGCAUAAAUUGCGAGCAUCCCGUAUUCAGUUUGCCAUAUCCAGCAUCCU------------GUUGGAGUUCAAGUUGAAGUUGAAAAUGGAAA-------UGGGAA
..........((..(((.....)))..)).((((((.((((..........((((((.....------------)))))).(((((.......)))))..)))).)-------))))). ( -25.10)
>DroEre_CAF1 36254 107 - 1
AACAAAUACUGUGGGCAUAAAUUGCGAGCAUCCCGUAUUCAGUUACCCAUAUCCAGCACCCA------------GUUGGAGUUCAAGUUGAAGUUGGAAAUGGAAAUGGGAAAUGGGAA
.........(((..(((.....)))..)))((((((.(((.(((..((((.((((((..((.------------...))..(((.....))))))))).)))).))).))).)))))). ( -30.70)
>DroYak_CAF1 48832 112 - 1
AACAAAUACAGUGGGCAUAAAUUGCGAGCAUCCCGUAUUCAGUUUGCCAUAUCCAGCAUCUAGCUGGAGUUGGAGUUGGAGUUCAAGUUGAAGUUGGAAAUGGAAA-------UGGGAA
..........((..(((.....)))..)).((((((.((((.....(((..((((((.((((((....)))))))))))).(((.....)))..)))...)))).)-------))))). ( -34.10)
>consensus
AACAAAUACAGUGGGCAUAAAUUGCGAGCAUCCCGUAUUCAGUUUGCCAUAUCCAGCAUCCA____________GUUGGAGUUCAAGUUGAAGUUGAAAAUGGAAA_______UGGGAA
..........((..(((.....)))..)).(((((...........((((.((((((.................)))))).(((((.......))))).))))..........))))). (-20.65 = -20.61 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:48 2006