Locus 2457

Sequence ID 3R_DroMel_CAF1
Location 6,791,967 – 6,792,077
Length 110
Max. P 0.767634
window4023

overview

Window 3

Location 6,791,967 – 6,792,077
Length 110
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.14
Mean single sequence MFE -28.74
Consensus MFE -17.02
Energy contribution -18.34
Covariance contribution 1.32
Combinations/Pair 1.08
Mean z-score -3.35
Structure conservation index 0.59
SVM decision value 0.52
SVM RNA-class probability 0.767634
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6791967 110 - 27905053
CCAAUUUG-CCCAGCUACCCAACUAACAAGACACAAAAUUUACAAUUUCAAAUUGUGAGCAUGUGAAUUACGGAUGCAUAGAUACACAUGCAUCUCCACGGCGAAGC---------AAGC
....((((-(...(((...............((((...((((((((.....))))))))..))))......((((((((........))))))))....)))...))---------))). ( -24.90)
>DroSim_CAF1 55683 110 - 1
CCAAUUUG-CCCAACUCCCCAACUAACAAGACACAAAAUUUACAAUUUCAAAUUGUGAGCAUGUGAAUUACGGAUGCAUAGAUACACAUGCAUCUCCACGGCGGAGC---------AAGC
........-.....((((((...........((((...((((((((.....))))))))..))))......((((((((........))))))))....)).)))).---------.... ( -26.00)
>DroEre_CAF1 35827 100 - 1
CCAAUUUG--------CCCCAACUAACAAGACACAAAAUUUACAAUUUCAAAUUGUGAGCAUGUGAAUUACGGAUGCAUAGAUACACAUGCAUCUCCACG---GAGC---------AAGC
....((((--------(.((...........((((...((((((((.....))))))))..))))......((((((((........))))))))....)---).))---------))). ( -24.80)
>DroYak_CAF1 48354 111 - 1
CCAAUUUGGCCCAGCUCCCCAACUAACAAGACACAAAAUUUACAAUUUCAAAUUGUGAGCAUGUGAAUUACGGAUGCAUAGAUACACAUGCAUCUCCACGGCGGAGC---------AAGC
.............(((((((...........((((...((((((((.....))))))))..))))......((((((((........))))))))....)).)))))---------.... ( -30.40)
>DroAna_CAF1 7534 120 - 1
CCAACCUCCCACUGCUGUAGCACUAACAAGACACAAAAUUUACAAUUUCAAAUUGUGAGCAUGUGAAUUACGGAUGCAUAGAUACACAUGUAUCUCUACGGCGGAGGAGGAAACUGAAAC
....(((((..(((((((((...........((((...((((((((.....))))))))..))))......((((((((........))))))))))))))))).))))).......... ( -37.60)
>consensus
CCAAUUUG_CCCAGCUCCCCAACUAACAAGACACAAAAUUUACAAUUUCAAAUUGUGAGCAUGUGAAUUACGGAUGCAUAGAUACACAUGCAUCUCCACGGCGGAGC_________AAGC
..............((((((...........((((...((((((((.....))))))))..))))......((((((((........))))))))....)).)))).............. (-17.02 = -18.34 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:47 2006