Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,790,984 – 6,791,104 |
Length | 120 |
Max. P | 0.985539 |
Location | 6,790,984 – 6,791,104 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.58 |
Mean single sequence MFE | -35.89 |
Consensus MFE | -31.88 |
Energy contribution | -31.96 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.15 |
Mean z-score | -1.49 |
Structure conservation index | 0.89 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919107 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6790984 120 + 27905053 CGGCCAGAGGCCACCGGAGUGGGUGGAUAAGCUGCAGGUAAAAUCAGGUGGGUGGGCUCAAUUAGAAAGGUAAUGGUUCUGCAGCAAAAGGGGCCUCACUAAACGUGCUGAGAAAUGAAU ((((..(((((((((......)))......((((((((....((((..((((....)))).............))))))))))))......))))))((.....)))))).......... ( -34.56) >DroSec_CAF1 49684 120 + 1 CGGCCAGAGGCCACCCGAGUGGGUGGAUAAGCUGCAGGUAAAAUGAGGUGGGUGGACUCAAUUAGAAAGGUAAUGGGUCUGCAGCAAAAAGGGCCUCACUAAACGUUCUGAGAAAUGAUU .((((.....((((((....))))))....((((((((.....((((.........))))((((......))))...))))))))......))))........((((......))))... ( -35.80) >DroSim_CAF1 54692 120 + 1 CGGCCAGAGGCCACCCGAGUGGGUGGAUAAGCUGCAGGUAAAAUCAGGUGGGUGGACUCAAUUAGAAAGGUAAUGGGUCUGCAGCAAAAGGGGCCUCACUAAACGUGCUGAGAAAUGAUU ((((..((((((((((....))))......(((((.......(((.....)))(((((((.(((......)))))))))))))))......))))))((.....)))))).......... ( -37.30) >DroEre_CAF1 34855 120 + 1 CGGCCAGGGGCCAAAGGAGUGGGUGGAUAAGCUGCAGGUAAAACCAGGUGGGUGGACUCAAUUAGGAAGGUAAUGGGUCUGCAGCAAGAGGGGCCUCACUAAACGUACUGAGAAAUGAAU .((((...)))).....((((.((......(((((.......(((.....)))(((((((.(((......)))))))))))))))..(((....))).....)).))))........... ( -33.90) >DroYak_CAF1 47475 120 + 1 CGGCCAGAGGCUACCGGAGUGGGUGGAUAAGCUGCAGGUGAAACCAGGUGGGUGGACCCAAUUAGAAAGGUAAUGGGUCUGCAGCAGAAGGGGCCUCACUAAACGUGCUGAGAAAUGAUU ((((..(((((((((......)))......(((((.......(((.....)))(((((((.(((......)))))))))))))))......))))))((.....)))))).......... ( -37.90) >consensus CGGCCAGAGGCCACCGGAGUGGGUGGAUAAGCUGCAGGUAAAAUCAGGUGGGUGGACUCAAUUAGAAAGGUAAUGGGUCUGCAGCAAAAGGGGCCUCACUAAACGUGCUGAGAAAUGAUU .((((.....(((((......)))))....(((((.......(((.....)))(((((((.(((......)))))))))))))))......))))......................... (-31.88 = -31.96 + 0.08)
Location | 6,790,984 – 6,791,104 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.58 |
Mean single sequence MFE | -29.86 |
Consensus MFE | -24.38 |
Energy contribution | -24.98 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.34 |
Structure conservation index | 0.82 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6790984 120 - 27905053 AUUCAUUUCUCAGCACGUUUAGUGAGGCCCCUUUUGCUGCAGAACCAUUACCUUUCUAAUUGAGCCCACCCACCUGAUUUUACCUGCAGCUUAUCCACCCACUCCGGUGGCCUCUGGCCG .............(((.....))).((((......(((((((...........(((.....)))..((......)).......)))))))....(((((......))))).....)))). ( -28.30) >DroSec_CAF1 49684 120 - 1 AAUCAUUUCUCAGAACGUUUAGUGAGGCCCUUUUUGCUGCAGACCCAUUACCUUUCUAAUUGAGUCCACCCACCUCAUUUUACCUGCAGCUUAUCCACCCACUCGGGUGGCCUCUGGCCG ..(((((...(.....)...)))))((((......(((((((....((((......))))((((.........))))......)))))))....((((((....)))))).....)))). ( -33.10) >DroSim_CAF1 54692 120 - 1 AAUCAUUUCUCAGCACGUUUAGUGAGGCCCCUUUUGCUGCAGACCCAUUACCUUUCUAAUUGAGUCCACCCACCUGAUUUUACCUGCAGCUUAUCCACCCACUCGGGUGGCCUCUGGCCG .............(((.....))).((((......(((((((...........(((.....)))..((......)).......)))))))....((((((....)))))).....)))). ( -32.10) >DroEre_CAF1 34855 120 - 1 AUUCAUUUCUCAGUACGUUUAGUGAGGCCCCUCUUGCUGCAGACCCAUUACCUUCCUAAUUGAGUCCACCCACCUGGUUUUACCUGCAGCUUAUCCACCCACUCCUUUGGCCCCUGGCCG ....................((((.((........(((((((....((((......))))((((.(((......))).)))).))))))).......)))))).....((((...)))). ( -24.46) >DroYak_CAF1 47475 120 - 1 AAUCAUUUCUCAGCACGUUUAGUGAGGCCCCUUCUGCUGCAGACCCAUUACCUUUCUAAUUGGGUCCACCCACCUGGUUUCACCUGCAGCUUAUCCACCCACUCCGGUAGCCUCUGGCCG .............(((.....))).((((......((((((((((((.............)))))).........((.....))))))))......(((......))).......)))). ( -31.32) >consensus AAUCAUUUCUCAGCACGUUUAGUGAGGCCCCUUUUGCUGCAGACCCAUUACCUUUCUAAUUGAGUCCACCCACCUGAUUUUACCUGCAGCUUAUCCACCCACUCCGGUGGCCUCUGGCCG ..(((((...(.....)...)))))((((......(((((((.........................................)))))))....(((((......))))).....)))). (-24.38 = -24.98 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:46 2006