Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,782,001 – 6,782,120 |
Length | 119 |
Max. P | 0.664034 |
Location | 6,782,001 – 6,782,120 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.92 |
Mean single sequence MFE | -23.55 |
Consensus MFE | -20.92 |
Energy contribution | -21.17 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.10 |
Mean z-score | -1.29 |
Structure conservation index | 0.89 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.664034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6782001 119 + 27905053 -GCGGGGUCAAAGGCGACAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAAAGGGAUUGCACAAACAUUAAAAAGGGAUUUCUGGAAACGCAUUCAAAUGCCAGAAACAAACCAAACCAAA -((...(((......)))...)).....((......(((((((.(((......))))))))))..........((..((((((....)((((....)))).)))))....))...))... ( -24.80) >DroSec_CAF1 46123 119 + 1 -GCGGGGUCAAAGGCGACAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAGAGGGAUUGCACAAACAUUAAAAAGGGAUUUCUGAAAACGCAUUCAAAUGCCAGAGACAAACCAAACCAAA -((...(((......)))...)).....((......(((((((.(((......))))))))))..........((..((((((.....((((....))))))))))....))...))... ( -24.50) >DroSim_CAF1 50157 119 + 1 -GCGGGGUCAAAGGCGACAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAAAGGGAUUGCACAAACAUUAAAAAGGGAUUUCUGGAAACGCAUUCAAAUGCCAGAGACAAACCAAACCAAA -((...(((......)))...)).....((......(((((((.(((......))))))))))..........((..((((((....)((((....)))).)))))....))...))... ( -24.90) >DroEre_CAF1 31383 120 + 1 GGCGGGUUCAAAGGCGACAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAAAGGGAUUGCACAAACAUUAAAAAGGGAUUUCUGAAAACGCAUUCAAAUGCCAGAGACAAACCAAACCAAA ...((((((....((......))......))))...(((((((.(((......))))))))))..........((..((((((.....((((....))))))))))....))...))... ( -21.90) >DroYak_CAF1 43814 119 + 1 -GCAGGGUCAAAGGCGACAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAAAGGGAUUGCACAAACAUUAAAAAGGGAUUUCAGCAAACGCAUUCAAAUGCCAGCGACAAACCAAACCAAA -((...(((......)))...)).....((......(((((((.(((......))))))))))..........((..(.((.((....((((....))))..)))).)..))...))... ( -21.10) >DroAna_CAF1 3283 119 + 1 -GCCGUGUCAAAGGCGGCAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAAAGGGAUUGCGCAAACAUUAAAAAGGGAUUUCAGAAAAAGCAUUCAAAUGCCAGAGACAAACCAAACCAAA -(((((.......)))))..........((..(((((..((((((...........))))))...)))))...((.((((..(((......))))))).)).........))........ ( -24.10) >consensus _GCGGGGUCAAAGGCGACAAAGCAUAACGGAAUUAAUUGUGCGCAUUAAAAGGGAUUGCACAAACAUUAAAAAGGGAUUUCUGAAAACGCAUUCAAAUGCCAGAGACAAACCAAACCAAA .((...(((......)))...)).....((......(((((((.(((......))))))))))..........((..((((((.....((((....))))))))))....))...))... (-20.92 = -21.17 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:44 2006