Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,781,439 – 6,781,529 |
Length | 90 |
Max. P | 0.633262 |
Location | 6,781,439 – 6,781,529 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 83.33 |
Mean single sequence MFE | -18.66 |
Consensus MFE | -13.38 |
Energy contribution | -14.26 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.09 |
Mean z-score | -1.70 |
Structure conservation index | 0.72 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6781439 90 - 27905053 UGGUAAAAGAUUAAUCAAACAGACUUUGAUUGGGGCUUGAAAAAGAGUUAAUGAAUUUGCCCACAAGGCAAAUAUGCUAAUUA------------GAUUAAA- (((((.....(((((((((.....)))))))))(((((......))))).....(((((((.....))))))).)))))....------------.......- ( -17.50) >DroSec_CAF1 45557 90 - 1 UGGCAAAAGAUUAAUCAAACAGACUUUGAUUGGGGCUUGAAAAAGAGUUAAUGAAUUUGCCCACAAAGCAAAUAUGCCAAUUA------------GAUUAAG- (((((......((((((((.....))))))))((((((....))(((((....)))))))))............)))))....------------.......- ( -18.20) >DroSim_CAF1 49591 90 - 1 UGGCAAAAGAUUAAUCAAACAGACUUUGAUUGGGGCUUGAAAAAGAGUUAAUGAAUUUGCCCAAAAGGCAAAUAUGCUAAUUA------------GUUUAAG- (((((.....(((((((((.....)))))))))(((((......))))).....(((((((.....))))))).)))))....------------.......- ( -19.50) >DroEre_CAF1 30806 101 - 1 UGGCAAAAGAUUAAUCAAACAGACUUUGAUUGUGGCCUGACAAAGAGUUAAUGAAU-UGCCCAGCAGGCAAAU-UGCUAAUUAUAAAACUCAUACGCUUAAGC ((((((.....((((((((.....))))))))..(((((......((((....)))-)......)))))...)-)))))........................ ( -18.20) >DroYak_CAF1 43210 102 - 1 UGGCAAAAGAUUAAUCAAACAGACUUUGAUUGCGGCUUGACAAUGCGUUAAUGAAA-UGUCCACAAGCCAAAUAUGCUAAUUAUAAAACUCAUACGCUCAAGU (((((......((((((((.....)))))))).((((((.....(((((.....))-)))...)))))).....)))))........................ ( -19.90) >consensus UGGCAAAAGAUUAAUCAAACAGACUUUGAUUGGGGCUUGAAAAAGAGUUAAUGAAUUUGCCCACAAGGCAAAUAUGCUAAUUA____________GAUUAAG_ (((((.(((..((((((((.....))))))))...)))................(((((((.....))))))).)))))........................ (-13.38 = -14.26 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:41 2006