| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 956,202 – 956,298 |
| Length | 96 |
| Max. P | 0.654406 |
| Location | 956,202 – 956,298 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.92 |
| Mean single sequence MFE | -30.42 |
| Consensus MFE | -21.13 |
| Energy contribution | -21.47 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 956202 96 - 27905053 -----UUUC-------------UUCCUCAUUUUUGUUUCAGUGAGUCU-----CCUUCGUGCAGCUGCGGCACGUAAUGACAUGCGGCUGCCAAUGUUGUGGACGC-GCAUUGAGCUCCU -----....-------------..............(((((((.(((.-----.(..((((((((((((.((.....))...)))))))))..)))..)..)))..-.)))))))..... ( -28.70) >DroSec_CAF1 2289 90 - 1 ------------------------CCUUAUUUUUCUUUCAGUGAGUCU-----CCUUCGUGCAGCUGCGGCACGUAAUGACAUGCGGCUGCCAAUGUUGUGGACGC-GCAUUGAGCUCCU ------------------------............(((((((.(((.-----.(..((((((((((((.((.....))...)))))))))..)))..)..)))..-.)))))))..... ( -28.70) >DroSim_CAF1 2286 90 - 1 ------------------------CCUUAUUUUUCUUUCAGUGAGUCU-----CCUUCGUGCAGCUGCGGCACGUGAUGACAUGCGGCUGCCAAUGUUGUGGACGC-GCAUUGAGCUCCU ------------------------............(((((((.(((.-----.(..((((((((((((.((.....))...)))))))))..)))..)..)))..-.)))))))..... ( -28.70) >DroEre_CAF1 2328 107 - 1 CUUUGC-----GACUC-CAAAGUUCCUGAUUUUCCUUUCAGUGAGUCU-----CC-UCGUGCAUCUGCGGCACGUAAUGACAUGCGGCUGCCAAUGUUGUGGACGC-ACAUUGAGCUCCU (((((.-----.....-)))))..............(((((((.((.(-----((-.((.((((..(((((.((((......)))))))))..)))))).))).))-.)))))))..... ( -30.50) >DroYak_CAF1 2292 109 - 1 -----CCUCGAGACUCCCAAAAUUGCCGAUUUUUCUGUUAGUGAGUCU-----CCGUCGUGCAGCUGCGGCACGUAAUAACAUGCGGCUGCCAAUGUUGUGGACGC-ACAUUGAGCUCCU -----.((((((((((........((.((....)).))....))))))-----)((((.((((((.(((((.((((......)))))))))....)))))))))).-.....)))..... ( -33.70) >DroAna_CAF1 2115 104 - 1 -----CCU----ACAU-CAAAGUU------CUUUUUUUCUGAGAGUGUAGCACACUUCGUGUGGCUUCGGCACGUAAUGACAUGCGGCUGACAAUGUUGUGGACGCGGCAUUGAGCGCCU -----.((----((((-......(------(((.......))))))))))(((((...)))))((((((((.((((......)))))))))(((((((((....)))))))))))).... ( -32.20) >consensus _____C________________UUCCUGAUUUUUCUUUCAGUGAGUCU_____CCUUCGUGCAGCUGCGGCACGUAAUGACAUGCGGCUGCCAAUGUUGUGGACGC_GCAUUGAGCUCCU ........................................(.((((..............(((((((((.((.....))...)))))))))((((((.((....)).)))))).))))). (-21.13 = -21.47 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:35 2006