Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,776,886 – 6,777,006 |
Length | 120 |
Max. P | 0.568759 |
Location | 6,776,886 – 6,777,006 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.67 |
Mean single sequence MFE | -36.12 |
Consensus MFE | -22.90 |
Energy contribution | -23.77 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.32 |
Mean z-score | -1.69 |
Structure conservation index | 0.63 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6776886 120 + 27905053 UCCGAUUGGGUUGGUGGUCACUUGGCCUCCCCUCAAAACUACAAAUGCGAUGCGCUGAAGUUUUUGGAGGCCUACAAGUUUACGAAUAUCGUGCCCAUUAAUCGAGGGCUGAAAAACCAU .....((.(((((((((.(((..(((((((....((((((.((...(((...))))).)))))).)))))))...........(.....)))).))))))))).))((.(....).)).. ( -34.20) >DroVir_CAF1 1701 120 + 1 ACAGAUUGGGUGGGCGGUCAUAUGGCAUCGCCGCACAACUAUCGCUGCGAUCCGCUCAAGUAUUGCGAAACAUUCAUAAUGCCAAACAUAGCGCCCGUCAGUCGUGGCCUCAAAUCAAGG ...(((((((.(((((.(....(((((((((.((.........)).))))..(((.........)))............))))).....).)))))((((....))))))).)))).... ( -33.30) >DroSec_CAF1 41072 120 + 1 UCCGAUUGGGUUGGUGGUCACUUGGCCUCCCCUCAAAACUACAAAUGCGAUGCGCUCAAGUUUUUGGAGGCCUACAAGUUUACCAACAUAGUGCCCAUUAAUCGUGGGCUAAAAAAUCAU ...((((..((((((((..(((((((((((....((((((......(((...)))...)))))).)))))))...)))))))))))).....((((((.....)))))).....)))).. ( -40.10) >DroSim_CAF1 45052 120 + 1 UCCGAUUGGGUUGGUGGUCACUUGGCCUCCCCUCAAAACUACAAAUGCGAUGCGCUCAAGUUUUUGGAGGCCUACAAGUUUACCAACAUAGUGCCCAUUAAUCGUGGGCUAAAAAAUCAU ...((((..((((((((..(((((((((((....((((((......(((...)))...)))))).)))))))...)))))))))))).....((((((.....)))))).....)))).. ( -40.10) >DroEre_CAF1 26171 120 + 1 ACCGAUUGGGUUGGUGGACACUUGGCCUCUCCUCAAAACUACAAAUGCGAUGUGCUUAUGUUCCUGGAGACCUACAAGUUUUCCAACAUCGUGCCCAUUAAUCGUGGGCUCAAAAACCAC ......((((((((.....(((((...(((((........(((...((.....))...)))....)))))....)))))...)))))...(.((((((.....)))))).).....))). ( -32.40) >DroYak_CAF1 38427 120 + 1 ACCGACUGGGUUGGUGGUCACAUGGCCUCCCCUCAGAACUACAAAUGCGAUUCGGUGAAGUUCCUGGAGGCCUACAAGUUCUCCAACAUCGUGCCUAUUAAUCGUGGGCUCAAAAACCAC ......((((((((.((......(((((((.....(((((.((....((...)).)).)))))..))))))).......)).)))))...(.((((((.....)))))).).....))). ( -36.62) >consensus ACCGAUUGGGUUGGUGGUCACUUGGCCUCCCCUCAAAACUACAAAUGCGAUGCGCUCAAGUUUUUGGAGGCCUACAAGUUUACCAACAUAGUGCCCAUUAAUCGUGGGCUCAAAAACCAU ........(((((((((.(((..(((((((....((((((......(((...)))...)))))).))))))).....(((....)))...))).)))))))))................. (-22.90 = -23.77 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:19 2006