Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,775,344 – 6,775,464 |
Length | 120 |
Max. P | 0.680014 |
Location | 6,775,344 – 6,775,464 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.67 |
Mean single sequence MFE | -25.00 |
Consensus MFE | -22.10 |
Energy contribution | -22.50 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.41 |
Structure conservation index | 0.88 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6775344 120 + 27905053 GAAAGAUUGUUGCUGUUAAUAGUUUUGAAAACUUUUCAAAAUUAAUGAAUCAGCCAUGACGCGCACACUCGCACACACAUUAACCCCUAAAUGACGUCAUAAAAACAUCGUCUGGGGCAA ......(..(.(((((((.((((((((((.....)))))))))).)))..)))).)..).(((......)))...........((((.....((((............)))).))))... ( -25.60) >DroSec_CAF1 39524 120 + 1 GAAAGAUUGUUGCUGUUAAUAGUUUUGAAAACUUUUCAAAAUUAAUGAAUCAGCCAUGACGCGCACACUCGCACACACAUUAACGCCUAAAUGACGUCAUAAAAACAUCGUCUGGGGCAG ......(..(.(((((((.((((((((((.....)))))))))).)))..)))).)..).(((......)))............((((....((((............))))..)))).. ( -26.30) >DroSim_CAF1 43531 120 + 1 GAAAGAUUGUUGCUGUUAAUAGUUUUGAAAACUUUUCAAAAUUAAUGAAUCAGCCAUGACGCGCACACUCGCACACACAUUAACCCCUAAAUGACGUCAUAAAAACAUCGUCUGGGGCAG ......(..(.(((((((.((((((((((.....)))))))))).)))..)))).)..).(((......)))...........((((.....((((............)))).))))... ( -25.60) >DroEre_CAF1 24653 120 + 1 GAAAGAUUGUUGCUGUUAAUAGUUUUGAAAACUUUUCAAAAUUAAUGAAUCAACCAUGACGCGCACACUCGCACACACAUUAACCCCUAAAUGACGUCAUAAAAACAUCGUCUGGCGCAG (..((((.((((...(((.((((((((((.....)))))))))).)))..)))).((((((((......))).....((((........))))..))))).........))))..).... ( -23.20) >DroYak_CAF1 36871 120 + 1 GAAAGAUUGUUGCUGUUAAUAGUUUUGAAAAGUUUUCAAAAUUAAUGAAUCAACCAUGACGCGCGCACUCGCACACACAUUAACCCCUAAAUGACGUCAUAAAAACAUCGUCUGGCGCAG (..((((.((((...(((.((((((((((.....)))))))))).)))..)))).((((((.(((....))).....((((........)))).)))))).........))))..).... ( -24.30) >consensus GAAAGAUUGUUGCUGUUAAUAGUUUUGAAAACUUUUCAAAAUUAAUGAAUCAGCCAUGACGCGCACACUCGCACACACAUUAACCCCUAAAUGACGUCAUAAAAACAUCGUCUGGGGCAG ...(((((((((((((((.((((((((((.....)))))))))).)))..)))).((((((.((......)).....((((........)))).))))))...))))..))))....... (-22.10 = -22.50 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:15 2006