Locus 2444

Sequence ID 3R_DroMel_CAF1
Location 6,775,080 – 6,775,192
Length 112
Max. P 0.878657
window3989

overview

Window 9

Location 6,775,080 – 6,775,192
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.70
Mean single sequence MFE -32.04
Consensus MFE -25.60
Energy contribution -26.40
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.80
SVM decision value 0.90
SVM RNA-class probability 0.878657
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6775080 112 + 27905053
UAAAUGAAAUGCGCUAACUUUUCUGGGCCUCAAACAAAGGCGAACUAAACGCGGAUGUAAACGUGCACUUUUC-------CCCUUCCGACGCCCCGAAAAGUUUCC-CCAUGGGAAGUGU
..........(((((((((((((.((((.((.....((((.(((.....((((........)))).....)))-------.))))..)).)))).))))))))(((-(...))))))))) ( -33.50)
>DroSec_CAF1 39260 112 + 1
UAAAUGAAAUGCGCUAACUUUUCUGGGCCUCAAACAAAGGCGAACUAAACGCGGAUGUAAACGUGCACUUUUC-------CCCUUUCGACGCCCCGAAAAGUUUCC-CCAUGGGAAGUGU
..........(((((((((((((.((((.((....(((((.(((.....((((........)))).....)))-------.))))).)).)))).))))))))(((-(...))))))))) ( -34.80)
>DroSim_CAF1 43267 112 + 1
UAAAUGAAAUGCGCUAACUUUUCUGGGCCUCAAACAAAGGCGAACUAAACGCGGAUGUAAACGUGCACUUUUC-------CCCUUCCGACGCCCCGAAAAGUUUCC-CCAUGGGAAGUGU
..........(((((((((((((.((((.((.....((((.(((.....((((........)))).....)))-------.))))..)).)))).))))))))(((-(...))))))))) ( -33.50)
>DroEre_CAF1 24381 114 + 1
UAAAUGAAAUGCGCUAACUUUUCUGGGCCUCAAACAAAGGCAAACUAAACGCGGAUGUAAACGUGCACUUCGCC------CCCUUCCGCCGCCCCGAAAAGUUUCCCCCAUGGGAAGUGU
..........(((((((((((((.((((..........(((.........(((((((((....)))).))))).------.......))))))).))))))))((((....))))))))) ( -32.93)
>DroYak_CAF1 36591 120 + 1
UAAAUGAAAUGCGCUAACUUUUCUGGGCCUCAAACAAAGGCAAACUAAACGCGGAUGUAAACGUGCACUUUCCCCCUUUCCCCUUCCGACGCCCCACUAAGUUUCCCCCAUGGGAAGUGU
..........((((((((((....((((.((....(((((.........((((........)))).........)))))........)).))))....)))))((((....))))))))) ( -25.47)
>consensus
UAAAUGAAAUGCGCUAACUUUUCUGGGCCUCAAACAAAGGCGAACUAAACGCGGAUGUAAACGUGCACUUUUC_______CCCUUCCGACGCCCCGAAAAGUUUCC_CCAUGGGAAGUGU
..........(((((((((((((.((((.((......((.....))...((((........))))......................)).)))).))))))))(((......)))))))) (-25.60 = -26.40 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:14 2006