Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,774,826 – 6,774,945 |
Length | 119 |
Max. P | 0.812675 |
Location | 6,774,826 – 6,774,945 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.49 |
Mean single sequence MFE | -21.81 |
Consensus MFE | -20.56 |
Energy contribution | -20.56 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.32 |
Structure conservation index | 0.94 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812675 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6774826 119 - 27905053 GUAAUUUUCCGUUGUUAAAUCCUGUUUUUCAAAACUUCUUUCCAAAGUGCAA-UGGAAGUCAGCUCGAGCAGACAACAAGCAAAACGUAACAAAAAUGGAAGAAAAGUGGAAAAACAAAA ....(((((((((((((.....(((((............(((((........-)))))(((.((....)).)))...))))).....)))))...))))))))...((......)).... ( -21.70) >DroSec_CAF1 38999 119 - 1 GUAAUUUUCCGUUGUUAAAUCCUGUUUUUCAAAACUUCUUUCCAAAGUGCAA-UGGAAGUCAGCUCGAGCAGACAACAAGCAAAACGUAACAAAAAUGGAAGAAAAGUGGAAAAACAAAA ....(((((((((((((.....(((((............(((((........-)))))(((.((....)).)))...))))).....)))))...))))))))...((......)).... ( -21.70) >DroSim_CAF1 43005 120 - 1 GUAAUUUUCCGUUGUUAAAUCCUGUUUUUCAAAACUUCUUUCCAAAGUGCAAGUGGAAGUCAGCUCGAGCAGACAACAAGCAAAACGUAACAAAAAUGGAAGAAAAGUGGAAAAACAAAA ......................((((((((...((((.((((((...(((...((...(((.((....)).)))..)).)))..............))))))..)))).))))))))... ( -20.93) >DroEre_CAF1 24121 118 - 1 GUAAUUUUCCGUUGUUAAAUCCUGUUUUUCAAAACUUCUUUCCAAAGUGCAA-UGGAAGUCAGCUCGAGCAGACAACAAGCAAAACGUAACAAAAAUGGAAGAAAGUGG-AAAAACAAAA ......................((((((((...((((..(((((...(((..-((...(((.((....)).)))..)).)))..............)))))..)))).)-)))))))... ( -22.33) >DroYak_CAF1 36327 119 - 1 GUAAUUUUCCGUUGUUAAAUCCUGUUUUUCAAAACUUCUUUCCAAAGUGCAA-UGGAAGUCAGCUCGAGCAGACAACAAGCAAAACGUAACAAAAAUGGAAGAAAGCGGCAAAAACAAAA ((..(((((((((((((.....(((((............(((((........-)))))(((.((....)).)))...))))).....)))))...))))))))..))............. ( -22.40) >consensus GUAAUUUUCCGUUGUUAAAUCCUGUUUUUCAAAACUUCUUUCCAAAGUGCAA_UGGAAGUCAGCUCGAGCAGACAACAAGCAAAACGUAACAAAAAUGGAAGAAAAGUGGAAAAACAAAA ....(((((((((((((.....(((((............(((((.........)))))(((.((....)).)))...))))).....)))))...))))))))................. (-20.56 = -20.56 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:13 2006