Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,774,103 – 6,774,204 |
Length | 101 |
Max. P | 0.981518 |
Location | 6,774,103 – 6,774,204 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.06 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -15.55 |
Energy contribution | -15.75 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.65 |
Structure conservation index | 0.66 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6774103 101 - 27905053 CCCCUCCUCCA--------------CUACCC----CUCCAUCUCCU-UGGCCCUCGGCCCUUUUCUUCCUUUGGCCAGGACACACUCUGACCCUGAGGUCUUUGUCCACUUGCCAGGAAA ...........--------------......----.......((((-.(((....((((.............)))).(((((......((((....))))..)))))....))))))).. ( -26.32) >DroSec_CAF1 38284 101 - 1 CCCCUCCUCCA--------------CUACCCC---CUCCACCACCU-UGGCCCCCGGC-UUUUUCUUCCUUUGGCCAGGACUCUCUCUGUCCCUGAGGUCUUUGUCCACUUGCCAGGAAA ...........--------------.......---.........((-((((....(((-(............)))).((((..((((.......)))).....))))....))))))... ( -22.20) >DroSim_CAF1 42290 101 - 1 CCCCUCCUCCA--------------CUACCCA---CUCCACCUGCU-UGGCCCCCGGC-UUUUUCUUCCUUUGGCCAGGACUCACUCUGUCCCUGAGGUCUUUGUCCACUUGCCAGGAAA ...........--------------.......---.........((-((((....(((-(............)))).((((...(((.......)))......))))....))))))... ( -22.20) >DroEre_CAF1 23382 111 - 1 CCCCUCUUCCAUGCUCCAUCCUCCAUU--------CUCCACCUACUCUGGCCCACCGC-UUUUUCGUCCUUUGGCCAGGACUCACUCAGUCCCUGAGGUCUUUGUCCACUUGCCAGGAAA ......((((..((.............--------............(((((....((-......)).....)))))((((...(((((...)))))......))))....))..)))). ( -23.20) >DroYak_CAF1 35572 119 - 1 CCCCUCCUCCAUCCUAUAUCCUCCAUUACCCCCUCCUCCACCUCCUUGGGCGCACCGC-AUUUUCGUCCUUUGGCCAGGACUCACUCUGUCCCUGAGGUCUUUGUCCACUUGGCAGGAAA ..................(((((((..............(((((...((((((...))-......(((((......))))).......))))..)))))...........))).)))).. ( -24.71) >consensus CCCCUCCUCCA______________CUACCC____CUCCACCUCCU_UGGCCCACGGC_UUUUUCUUCCUUUGGCCAGGACUCACUCUGUCCCUGAGGUCUUUGUCCACUUGCCAGGAAA .......(((......................................((((....................)))).((((...(((.......)))......))))........))).. (-15.55 = -15.75 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:11 2006