Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 949,998 – 950,102 |
Length | 104 |
Max. P | 0.979108 |
Location | 949,998 – 950,102 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 79.19 |
Mean single sequence MFE | -19.77 |
Consensus MFE | -12.04 |
Energy contribution | -12.97 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.06 |
Mean z-score | -2.55 |
Structure conservation index | 0.61 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 949998 104 - 27905053 UGCUACCAUCCAAUUGGUAAUCCAAGUAGACCCCAGCGAAGUUCAGUGGUUUCUCCUUGGGCUACCACGUACCUACCACGUACCUACCACCUACCCCAAAAUCC ..............(((((..(((((.(((..(((.(........))))..))).)))))..))))).((((.......))))..................... ( -23.30) >DroSec_CAF1 39045 93 - 1 UGUUUCCCUCCAAUUGGUAAUCCAAGUAGACCCCAGCGAAAUUCAGUGGUUUCUCCUUGGCCU-----------ACCACGUACCUACCACCUUCCCCAAAAUCC ..............(((((..(((((.(((..(((.(........))))..))).)))))..)-----------)))).......................... ( -18.90) >DroSim_CAF1 45103 93 - 1 UGUUUCCCUCCAAUUGGUAAUCCAAGUAGACCCCAGCGAAAUUCAGUGGUUUCUCCUUGGCCU-----------ACCACGUACCUACCACCUUCCCCAAAAUCC ..............(((((..(((((.(((..(((.(........))))..))).)))))..)-----------)))).......................... ( -18.90) >DroYak_CAF1 62828 82 - 1 AGUUGCCACCCACUUGGUAAUCCAAGUAGAGUCCUGCGAAAUACUGUGGUUUCUCCAUGGCCU----------------------AGCACCUUACCCAAAACCC .(((((((...((((((....)))))).(((..(..((......))..)...)))..))))..----------------------)))................ ( -18.00) >consensus UGUUUCCAUCCAAUUGGUAAUCCAAGUAGACCCCAGCGAAAUUCAGUGGUUUCUCCUUGGCCU___________ACCACGUACCUACCACCUUCCCCAAAAUCC .((((((........))))))(((((.(((..((.((........))))..))).)))))............................................ (-12.04 = -12.97 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:34 2006