Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,773,054 – 6,773,156 |
Length | 102 |
Max. P | 0.797219 |
Location | 6,773,054 – 6,773,156 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.22 |
Mean single sequence MFE | -26.70 |
Consensus MFE | -12.45 |
Energy contribution | -13.58 |
Covariance contribution | 1.13 |
Combinations/Pair | 1.06 |
Mean z-score | -2.81 |
Structure conservation index | 0.47 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797219 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6773054 102 + 27905053 GGCGACGACAACAACUUGCUGCCACUUCCUCAUUCUGCUGCCACGCCAUCC------------CCAACAUACCCACCAUCCAAUGCCCGGCACCCAACUGUU---GU---UGUUGUCGCG .(((((((((((((((((.((((.............((......)).....------------....(((............)))...))))..)))..)))---))---))))))))). ( -28.10) >DroSec_CAF1 37303 99 + 1 GGCGACGACAACAACUUGCUGCCACUUCCUCAUGCUGCUGCCUCACCAACC------------CCACCAUACCCACCACCCAAUGCCCGGCACCCAACUGUU---G------UUGUCGCG .((((((((((((..(((.((((..........((....))..........------------....(((............)))...))))..))).))))---)------))))))). ( -24.80) >DroEre_CAF1 22322 114 + 1 GGCGACGACAACAACUUGCUGCCACUUUCCCAUUCUGCCAC-ACGCCACCCACCACCCGCCACCCACCAU--UCACCACCCAAUGCCCGGCACCCAACUGCUGUUGU---UGUUGUCGCG .((((((((((((((..((((((.............((...-..)).....................(((--(........))))...)))).......)).)))))---))))))))). ( -29.51) >DroYak_CAF1 34467 117 + 1 GGCGACGACAACAACUUGCUGCCACUUCCUCAUUCUGCCAC-ACAACACCCUCCACCCACCACCCACCAU--UCACUACCCAAUGCCCGACACCCAACUGCUGUUGUUGUUGUUGUCGCG .((((((((((((((..((.((.............((....-.))......................(((--(........))))..............)).)).)))))))))))))). ( -24.40) >consensus GGCGACGACAACAACUUGCUGCCACUUCCUCAUUCUGCCAC_ACACCACCC____________CCACCAU__CCACCACCCAAUGCCCGGCACCCAACUGCU___GU___UGUUGUCGCG .(((((((((.......((.................)).................................................(((((......))))).......))))))))). (-12.45 = -13.58 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:06 2006