Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,772,563 – 6,772,654 |
Length | 91 |
Max. P | 0.780204 |
Location | 6,772,563 – 6,772,654 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 83.13 |
Mean single sequence MFE | -23.85 |
Consensus MFE | -15.07 |
Energy contribution | -15.33 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 0.63 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759809 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6772563 91 + 27905053 AUAUAUAUGUGUAUGUAGUACUACUAUA----------UAUGUAUAUGAGGGCAAAAAGUUGCGAGUGUUUGUCAUGUGCCAUCACUUCCAACUGCUUUGG ...((((((..(((((((.....)))))----------))..))))))....((((.(((((.(((((..((.(....).)).))))).)))))..)))). ( -25.80) >DroSec_CAF1 36829 89 + 1 AUA--UUUGUAUAUGUAGUACUACUAUA----------UAUGUAUAUGAGGGCAAAAAGUUGCGAGUGUUUGUCAUGUGCCAACACUUCCAACUGCUUUGG .((--(.(((((((((((.....)))))----------)))))).)))....((((.(((((.(((((((.((.....)).))))))).)))))..)))). ( -23.60) >DroEre_CAF1 21816 82 + 1 AUA--UAUAUGCAUGUGGUACCC-UAU----------------AUAUGAGGGCAAAAAGUUGCGAGUGUUUGUCAUGUGCCAACACUUUCAACUGCUUUGG ...--...............(((-(..----------------.....))))((((.(((((.(((((((.((.....)).))))))).)))))..)))). ( -20.40) >DroYak_CAF1 33955 98 + 1 AUA--CGUAUGUAUGUGGCACUA-UAUAUGUAUGAAGGUAUGUAUAUGAGGGCAAAAAGUUGCGAGUGUUUGUCAUGUGCCAACACUUUCAACUGCUUUGG ...--((((((((((((....))-))))))))))..................((((.(((((.(((((((.((.....)).))))))).)))))..)))). ( -25.60) >consensus AUA__UAUAUGUAUGUAGUACUA_UAUA__________UAUGUAUAUGAGGGCAAAAAGUUGCGAGUGUUUGUCAUGUGCCAACACUUCCAACUGCUUUGG ....................................................((((.(((((.(((((((.((.....)).))))))).)))))..)))). (-15.07 = -15.33 + 0.25)
Location | 6,772,563 – 6,772,654 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 83.13 |
Mean single sequence MFE | -16.80 |
Consensus MFE | -13.07 |
Energy contribution | -13.33 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.77 |
Structure conservation index | 0.78 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780204 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6772563 91 - 27905053 CCAAAGCAGUUGGAAGUGAUGGCACAUGACAAACACUCGCAACUUUUUGCCCUCAUAUACAUA----------UAUAGUAGUACUACAUACACAUAUAUAU .(((((.(((((..((((.((........))..))))..))))))))))...........(((----------((((((.(((.....))))).))))))) ( -14.60) >DroSec_CAF1 36829 89 - 1 CCAAAGCAGUUGGAAGUGUUGGCACAUGACAAACACUCGCAACUUUUUGCCCUCAUAUACAUA----------UAUAGUAGUACUACAUAUACAAA--UAU .(((((.(((((..((((((..(....)...))))))..))))))))))............((----------(((.(((....))))))))....--... ( -16.10) >DroEre_CAF1 21816 82 - 1 CCAAAGCAGUUGAAAGUGUUGGCACAUGACAAACACUCGCAACUUUUUGCCCUCAUAU----------------AUA-GGGUACCACAUGCAUAUA--UAU .....(((((((..((((((..(....)...))))))..))))....((((((.....----------------..)-))))).....))).....--... ( -21.10) >DroYak_CAF1 33955 98 - 1 CCAAAGCAGUUGAAAGUGUUGGCACAUGACAAACACUCGCAACUUUUUGCCCUCAUAUACAUACCUUCAUACAUAUA-UAGUGCCACAUACAUACG--UAU .(((((.(((((..((((((..(....)...))))))..))))))))))...................((((.(((.-((........)).))).)--))) ( -15.40) >consensus CCAAAGCAGUUGAAAGUGUUGGCACAUGACAAACACUCGCAACUUUUUGCCCUCAUAUACAUA__________UAUA_UAGUACCACAUACACAUA__UAU .(((((.(((((..((((((..(....)...))))))..)))))))))).................................................... (-13.07 = -13.33 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:02 2006