Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,771,639 – 6,771,799 |
Length | 160 |
Max. P | 0.994414 |
Location | 6,771,639 – 6,771,759 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.67 |
Mean single sequence MFE | -42.96 |
Consensus MFE | -41.36 |
Energy contribution | -41.56 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.96 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.789406 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6771639 120 + 27905053 CUGUGCUGCAUGCGAGGCGGGCACAACAAGUUAAUUACGGAGGCAUGCAACUCACAGUUGCCGCCAUAAAUUGUGCGGGCUUGGGGGACCCAACUUGAUGUGCAGCGUUUAAUGAGUGUG ....((((((((((((..(((..(..((((((...(((((.(((..(((((.....))))).))).....)))))..))))))..)..)))..)))).)))))))).............. ( -43.40) >DroSec_CAF1 35893 120 + 1 CUGUGCUGCAUGCGAGGCGGGCACAACAAGUUAAUUACGGAGGCAUGCAACUCACAGUUGCCGCCAUAAAUUGUGCGGGCUUGGGCGACCCAACUUGAUGUGCAGCGUUUAAUGAGUGUG ....((((((((((((((..((((((...((.....))...(((..(((((.....))))).))).....))))))..))(((((...))))))))).)))))))).............. ( -41.20) >DroSim_CAF1 40452 120 + 1 CUGUGCUGCAUGCGAGGCGGGCACAACAAGUUAAUUACGGAGGCAUGCAACUCACAGUUGCCGCCAUAAAUUGUGCGGGCUUGGGGGACCCAACUUGAUGUGCAGCGUUUAAUGAGUGUG ....((((((((((((..(((..(..((((((...(((((.(((..(((((.....))))).))).....)))))..))))))..)..)))..)))).)))))))).............. ( -43.40) >DroEre_CAF1 20895 120 + 1 CUGUGCUGCAUGCGAGGCGGGCACAACAAGUUAAUUACGGAGGCAUGCAACUCACAGUUGCCGCCAUAAAUUGUGCGGGCUUGGGGGACCCAACUUGAUGUGCAGCGUUUAAUGAGUGUG ....((((((((((((..(((..(..((((((...(((((.(((..(((((.....))))).))).....)))))..))))))..)..)))..)))).)))))))).............. ( -43.40) >DroYak_CAF1 32990 120 + 1 CUGUGCUGCAUGCGAGGCGGGCACAACAAGUUAAUUACGGAGGCAUGCAACUCACAGUUGCCGCCAUAAAUUGUGCGGGCUUGGGGGACCCAACUUGAUGUGCAGCGUUUAAUGAGUGUG ....((((((((((((..(((..(..((((((...(((((.(((..(((((.....))))).))).....)))))..))))))..)..)))..)))).)))))))).............. ( -43.40) >consensus CUGUGCUGCAUGCGAGGCGGGCACAACAAGUUAAUUACGGAGGCAUGCAACUCACAGUUGCCGCCAUAAAUUGUGCGGGCUUGGGGGACCCAACUUGAUGUGCAGCGUUUAAUGAGUGUG ....((((((((((((..(((..(..((((((...(((((.(((..(((((.....))))).))).....)))))..))))))..)..)))..)))).)))))))).............. (-41.36 = -41.56 + 0.20)
Location | 6,771,639 – 6,771,759 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 99.67 |
Mean single sequence MFE | -37.41 |
Consensus MFE | -37.41 |
Energy contribution | -37.41 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.04 |
Structure conservation index | 1.00 |
SVM decision value | 2.48 |
SVM RNA-class probability | 0.994414 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6771639 120 - 27905053 CACACUCAUUAAACGCUGCACAUCAAGUUGGGUCCCCCAAGCCCGCACAAUUUAUGGCGGCAACUGUGAGUUGCAUGCCUCCGUAAUUAACUUGUUGUGCCCGCCUCGCAUGCAGCACAG ..............((((((.......(((((...)))))((..(((((((((((((.((((..(((.....))))))).)))))).......)))))))..))......)))))).... ( -37.41) >DroSec_CAF1 35893 120 - 1 CACACUCAUUAAACGCUGCACAUCAAGUUGGGUCGCCCAAGCCCGCACAAUUUAUGGCGGCAACUGUGAGUUGCAUGCCUCCGUAAUUAACUUGUUGUGCCCGCCUCGCAUGCAGCACAG ..............((((((.......(((((...)))))((..(((((((((((((.((((..(((.....))))))).)))))).......)))))))..))......)))))).... ( -37.41) >DroSim_CAF1 40452 120 - 1 CACACUCAUUAAACGCUGCACAUCAAGUUGGGUCCCCCAAGCCCGCACAAUUUAUGGCGGCAACUGUGAGUUGCAUGCCUCCGUAAUUAACUUGUUGUGCCCGCCUCGCAUGCAGCACAG ..............((((((.......(((((...)))))((..(((((((((((((.((((..(((.....))))))).)))))).......)))))))..))......)))))).... ( -37.41) >DroEre_CAF1 20895 120 - 1 CACACUCAUUAAACGCUGCACAUCAAGUUGGGUCCCCCAAGCCCGCACAAUUUAUGGCGGCAACUGUGAGUUGCAUGCCUCCGUAAUUAACUUGUUGUGCCCGCCUCGCAUGCAGCACAG ..............((((((.......(((((...)))))((..(((((((((((((.((((..(((.....))))))).)))))).......)))))))..))......)))))).... ( -37.41) >DroYak_CAF1 32990 120 - 1 CACACUCAUUAAACGCUGCACAUCAAGUUGGGUCCCCCAAGCCCGCACAAUUUAUGGCGGCAACUGUGAGUUGCAUGCCUCCGUAAUUAACUUGUUGUGCCCGCCUCGCAUGCAGCACAG ..............((((((.......(((((...)))))((..(((((((((((((.((((..(((.....))))))).)))))).......)))))))..))......)))))).... ( -37.41) >consensus CACACUCAUUAAACGCUGCACAUCAAGUUGGGUCCCCCAAGCCCGCACAAUUUAUGGCGGCAACUGUGAGUUGCAUGCCUCCGUAAUUAACUUGUUGUGCCCGCCUCGCAUGCAGCACAG ..............((((((.......(((((...)))))((..(((((((((((((.((((..(((.....))))))).)))))).......)))))))..))......)))))).... (-37.41 = -37.41 + 0.00)
Location | 6,771,679 – 6,771,799 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.62 |
Mean single sequence MFE | -28.28 |
Consensus MFE | -28.20 |
Energy contribution | -28.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 1.00 |
SVM decision value | 2.15 |
SVM RNA-class probability | 0.989073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6771679 120 - 27905053 CCCCUCUCCUAAUUUAUCCCGCUUUCCUGGCCAACAUUUGCACACUCAUUAAACGCUGCACAUCAAGUUGGGUCCCCCAAGCCCGCACAAUUUAUGGCGGCAACUGUGAGUUGCAUGCCU ............................(((.......((((.((((((.....(((((.(((.(((((((((.......))))....)))))))))))))....)))))))))).))). ( -28.20) >DroSec_CAF1 35933 116 - 1 ----CCUCCUAAUUUAUUCCGCUUUCCUGGCCAACAUUUGCACACUCAUUAAACGCUGCACAUCAAGUUGGGUCGCCCAAGCCCGCACAAUUUAUGGCGGCAACUGUGAGUUGCAUGCCU ----........................(((.......((((.((((((.....(((((.(((.((((((.((.((....))..)).))))))))))))))....)))))))))).))). ( -28.60) >DroSim_CAF1 40492 116 - 1 ----CCUCCUAAUUUAUCCCGCUUUCCUGGCCAACAUUUGCACACUCAUUAAACGCUGCACAUCAAGUUGGGUCCCCCAAGCCCGCACAAUUUAUGGCGGCAACUGUGAGUUGCAUGCCU ----........................(((.......((((.((((((.....(((((.(((.(((((((((.......))))....)))))))))))))....)))))))))).))). ( -28.20) >DroEre_CAF1 20935 116 - 1 ----CCUCCUAAUUUAUCCCGCUUUCCUGGCCAACAUUUGCACACUCAUUAAACGCUGCACAUCAAGUUGGGUCCCCCAAGCCCGCACAAUUUAUGGCGGCAACUGUGAGUUGCAUGCCU ----........................(((.......((((.((((((.....(((((.(((.(((((((((.......))))....)))))))))))))....)))))))))).))). ( -28.20) >DroYak_CAF1 33030 116 - 1 ----CCUCCUAAUUUAUCCCGCUUUCCUGGCCAACAUUUGCACACUCAUUAAACGCUGCACAUCAAGUUGGGUCCCCCAAGCCCGCACAAUUUAUGGCGGCAACUGUGAGUUGCAUGCCU ----........................(((.......((((.((((((.....(((((.(((.(((((((((.......))))....)))))))))))))....)))))))))).))). ( -28.20) >consensus ____CCUCCUAAUUUAUCCCGCUUUCCUGGCCAACAUUUGCACACUCAUUAAACGCUGCACAUCAAGUUGGGUCCCCCAAGCCCGCACAAUUUAUGGCGGCAACUGUGAGUUGCAUGCCU ............................(((.......((((.((((((.....(((((.(((.(((((((((.......))))....)))))))))))))....)))))))))).))). (-28.20 = -28.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:00 2006