Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,771,087 – 6,771,206 |
Length | 119 |
Max. P | 0.997398 |
Location | 6,771,087 – 6,771,206 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.14 |
Mean single sequence MFE | -33.52 |
Consensus MFE | -30.38 |
Energy contribution | -30.02 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.15 |
Mean z-score | -2.01 |
Structure conservation index | 0.91 |
SVM decision value | 2.85 |
SVM RNA-class probability | 0.997398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6771087 119 + 27905053 -UUCCAGCUUUCCCCUCUUCAGACAUCGUUGUUUGACGCGGUUUUUCGCGAUGUAUUGUUUCCUUUGCUUGUCAACAACAGUCGGCGAAUUUCUGUCAUAUUGGCAUUUGAGGAGCAAUU -.............(((((((((..((((((.(((.(((((....))))).....(((((..(.......)..)))))))).)))))).....((((.....)))))))))))))..... ( -29.30) >DroSec_CAF1 35356 119 + 1 -UUCCAGCUUUCCCCUCUUCAGACAUCGUUGUUUGACGCGGUUUUUCGCGAUGUAUUGUUUCCUUUGCUUGUCAACGACAGUUGGCAAAUUUCUGUCAUAUUGGCAUGUGGGGAGCAAUU -.................(((((((....)))))))(((((....)))))....((((((((((..((.((((((.(((((..(.....)..)))))...)))))).)))))))))))). ( -35.50) >DroSim_CAF1 39916 119 + 1 -UUCCAGCUUUCCCCUCUUCAGACAUCGUUGUUUGACGCGGUUUUUCGCGAUGUAUUGUUUCCUUUGCUUGUCAACGACAGUUGGCAAAUUUCUGUCAUAUUGGCAUGUGGGGAGCAAUU -.................(((((((....)))))))(((((....)))))....((((((((((..((.((((((.(((((..(.....)..)))))...)))))).)))))))))))). ( -35.50) >DroEre_CAF1 20288 119 + 1 -UUUCAGCUUUCCCCUCUUCAGACAUCGUUGUUUGACGCGGUUUUUCGCAAUGUAUUGUUUCCUUUGCCUGUCAACGACAGUUGGCGAAUUUCUAUCAAAUGGGCAUGUGGGGAGUGAUU -..(((...((((((.(.(((((((....))))))).((((....))))................(((((((((((....))))))((.......))....))))).).))))))))).. ( -34.50) >DroYak_CAF1 32361 120 + 1 UUUUCAGAUUUCCCCUCUUCAGACAUCGUUGUUUGACGCGGUUUUUCGCGAUGUAUUGUUUCCUUUGCUUGUCAACGACAGUUGGCGAAUUUCUGUCAUAUUGGCAUGUGGGAAGUAAUU .......(((((((....(((((((....)))))))(((((....)))))................((.((((((.(((((..(.....)..)))))...)))))).))))))))).... ( -32.80) >consensus _UUCCAGCUUUCCCCUCUUCAGACAUCGUUGUUUGACGCGGUUUUUCGCGAUGUAUUGUUUCCUUUGCUUGUCAACGACAGUUGGCGAAUUUCUGUCAUAUUGGCAUGUGGGGAGCAAUU ..................(((((((....)))))))(((((....)))))....((((((((((.(((((((((((....)))))))...............))))...)))))))))). (-30.38 = -30.02 + -0.36)
Location | 6,771,087 – 6,771,206 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.14 |
Mean single sequence MFE | -27.54 |
Consensus MFE | -25.48 |
Energy contribution | -24.88 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.19 |
Mean z-score | -1.66 |
Structure conservation index | 0.93 |
SVM decision value | 2.07 |
SVM RNA-class probability | 0.987206 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6771087 119 - 27905053 AAUUGCUCCUCAAAUGCCAAUAUGACAGAAAUUCGCCGACUGUUGUUGACAAGCAAAGGAAACAAUACAUCGCGAAAAACCGCGUCAAACAACGAUGUCUGAAGAGGGGAAAGCUGGAA- .....((((((....((.(((.........))).)).(((((((((((((.......(....)........(((......)))))).)))))))..)))....))))))..........- ( -27.60) >DroSec_CAF1 35356 119 - 1 AAUUGCUCCCCACAUGCCAAUAUGACAGAAAUUUGCCAACUGUCGUUGACAAGCAAAGGAAACAAUACAUCGCGAAAAACCGCGUCAAACAACGAUGUCUGAAGAGGGGAAAGCUGGAA- ....(((((((.((((....)))).((((..(((((((((....))))....)))))(....)....(((((((......)))((......))))))))))....)))))..)).....- ( -28.90) >DroSim_CAF1 39916 119 - 1 AAUUGCUCCCCACAUGCCAAUAUGACAGAAAUUUGCCAACUGUCGUUGACAAGCAAAGGAAACAAUACAUCGCGAAAAACCGCGUCAAACAACGAUGUCUGAAGAGGGGAAAGCUGGAA- ....(((((((.((((....)))).((((..(((((((((....))))....)))))(....)....(((((((......)))((......))))))))))....)))))..)).....- ( -28.90) >DroEre_CAF1 20288 119 - 1 AAUCACUCCCCACAUGCCCAUUUGAUAGAAAUUCGCCAACUGUCGUUGACAGGCAAAGGAAACAAUACAUUGCGAAAAACCGCGUCAAACAACGAUGUCUGAAGAGGGGAAAGCUGAAA- ......(((((.((........))........((..((..((((((((...(((...(....)........(((......))))))...))))))))..))..))))))).........- ( -27.00) >DroYak_CAF1 32361 120 - 1 AAUUACUUCCCACAUGCCAAUAUGACAGAAAUUCGCCAACUGUCGUUGACAAGCAAAGGAAACAAUACAUCGCGAAAAACCGCGUCAAACAACGAUGUCUGAAGAGGGGAAAUCUGAAAA ......(((((...(((....(((((((...........)))))))......)))..(....)...((((((((......)))((......)))))))........)))))......... ( -25.30) >consensus AAUUGCUCCCCACAUGCCAAUAUGACAGAAAUUCGCCAACUGUCGUUGACAAGCAAAGGAAACAAUACAUCGCGAAAAACCGCGUCAAACAACGAUGUCUGAAGAGGGGAAAGCUGGAA_ ......(((((...(((....(((((((...........)))))))......)))..(....)...((((((((......)))((......))))))).......))))).......... (-25.48 = -24.88 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:57 2006