| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 6,770,950 – 6,771,063 |
| Length | 113 |
| Max. P | 0.981261 |
| Location | 6,770,950 – 6,771,063 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.52 |
| Mean single sequence MFE | -38.13 |
| Consensus MFE | -36.20 |
| Energy contribution | -36.56 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.88 |
| SVM RNA-class probability | 0.981261 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6770950 113 + 27905053 UGCAGUCGUUGGGCUUGUUGUUGCUGGUAUUGUUGUUUGUAAGCGGCAGCGCACCCAAUUCAGCAAUUCACAUGCAUGCAGCCAACACAGCGGAAACCCCUGUCUGUACCCCU------- (((((..(((((.((.((...(((((..(((((((.(((...(((....)))...)))..)))))))...)).))).)))))))))((((.((....))))))))))).....------- ( -33.70) >DroSec_CAF1 35227 113 + 1 UGCAGUCGCUGGGUUUGUUGUUGCUGGUAUUGUUGUUUAUAAGCGGCGGCGCACCCAAUUCAGCAAUUCACAUGCAUGCACCGAACCCAGCGGAAACCCCUGUCUGUACCCCU------- (((((.(((((((((((.((((((((..(((((((.......(((....)))........)))))))...)).))).))).))))))))))(....)....).))))).....------- ( -41.56) >DroSim_CAF1 39778 113 + 1 UGCAGUCGCUGGGCUUGUUGUUGUUGGUAUUGUUGUUUAUAAGCGGCGGCGCACCCAAUUCAGCAAUUCACAUGCAUGCAGCGAACCCAGCGGAAACCCCUGUCUGUACCCCU------- (((((.(((((((.((((((((((((..(((((((.......(((....)))........)))))))...)).))).))))))).))))))(....)....).))))).....------- ( -39.16) >DroEre_CAF1 20151 113 + 1 UGCAGUCGCUGGGCUUGUUGUUGCUGGUAUUGUUCUUUAUAAGCGGCGGCGCACCCAAUUCAGCAAUUCACAUGCAUGCAGCGAACCCAGCGGAAACCCCUGUCUGUACCCCU------- (((((.(((((((.((((((((((((..((((((........(((....))).........))))))...)).))).))))))).))))))(....)....).))))).....------- ( -37.93) >DroYak_CAF1 32202 120 + 1 UGCAGUCGCUGGGCUUGUUGUUGCUGCCAUUGUUGUUUAUAAGCGGCGGCGCACCCAAUUCAGCAAUUCACAUGCAUGCAGCGAACUCAGCGGAAACCCCUGUCUGUACCCCUUUGCUCC (((((.(((((((.(((((((.((((((.((((.....))))..))))))............(((.......)))..))))))).))))))(....)....).)))))............ ( -38.30) >consensus UGCAGUCGCUGGGCUUGUUGUUGCUGGUAUUGUUGUUUAUAAGCGGCGGCGCACCCAAUUCAGCAAUUCACAUGCAUGCAGCGAACCCAGCGGAAACCCCUGUCUGUACCCCU_______ (((((.(((((((.((((((((((((..(((((((.......(((....)))........)))))))...)).))).))))))).))))))(....)....).)))))............ (-36.20 = -36.56 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:55 2006