Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,769,472 – 6,769,616 |
Length | 144 |
Max. P | 0.984588 |
Location | 6,769,472 – 6,769,576 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.73 |
Mean single sequence MFE | -30.47 |
Consensus MFE | -23.81 |
Energy contribution | -25.18 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.07 |
Mean z-score | -2.52 |
Structure conservation index | 0.78 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984588 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6769472 104 + 27905053 AAGCAAUUAAGCGGCUUACAAAUGCCUGCCAUUGCAG--------------UGGGUAUCUAAAUAUCCCAGGACCAAGCACAGAUACAGAUACUCACACACACACUC--UCGCACAUGUG ..(((((...(((((........))).)).))))).(--------------(((((((((...((((....(......)...)))).))))))))))...((((...--.......)))) ( -25.50) >DroSec_CAF1 33757 114 + 1 AAGCAAUUAAGCGGCUUACAAAUGCCAGACAUUGCAGUAUGUAGCCAAGUGUGGGUAUCUGAAUAUCCCAGGACCAAGCACAGAUACAGAUACUCACACACA--C----UCACACAUGGG ..((......))((((.(((..(((........)))...)))))))..(((((((((((((..((((....(......)...)))))))))))))))))...--(----(((....)))) ( -33.90) >DroEre_CAF1 18629 120 + 1 AAGCAAUUAAGCGGCUUACAAAUGCCAGCCAUUGCAGAAUGUAGCUCAGUGGGGGUAUCUGAAUAUCCCAGGACCAACUACAGAUACAGAUACUCUCUCACACACACACGCACACAUGUG ..(((((...(((((........))).)).))))).............(.(((((((((((..((((..((......))...))))))))))))))).).....((((........)))) ( -30.70) >DroYak_CAF1 30711 120 + 1 AAGCAAUUAAGCGGCUUACAAAUGCCAGCCAUUGCCAAAUGUAGCCGAGUGUGGGUAUCUGAAUAUCCCAGGACCAACUACAGAUACAGAUACUCCUACACACUUACACACACACAUGUG ..(((((...(((((........))).)).)))))....(((((..((((((..(((((((....((....)).......)))))))..)))))))))))......((((......)))) ( -31.80) >consensus AAGCAAUUAAGCGGCUUACAAAUGCCAGCCAUUGCAGAAUGUAGCC_AGUGUGGGUAUCUGAAUAUCCCAGGACCAACCACAGAUACAGAUACUCACACACACACAC__UCACACAUGUG ..(((((...(((((........))).)).))))).............(((((((((((((..((((...............)))))))))))))))))..................... (-23.81 = -25.18 + 1.38)
Location | 6,769,509 – 6,769,616 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.40 |
Mean single sequence MFE | -28.98 |
Consensus MFE | -19.93 |
Energy contribution | -21.31 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.08 |
Mean z-score | -1.88 |
Structure conservation index | 0.69 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6769509 107 + 27905053 -----------UGGGUAUCUAAAUAUCCCAGGACCAAGCACAGAUACAGAUACUCACACACACACUC--UCGCACAUGUGCAGAGCACAGACAGUUGGUGCAAACAACUCUGACAAGACU -----------(((((((((...((((....(......)...)))).)))))))))........(((--(.(((....)))))))..((((..((((.......))))))))........ ( -23.60) >DroSec_CAF1 33797 114 + 1 GUAGCCAAGUGUGGGUAUCUGAAUAUCCCAGGACCAAGCACAGAUACAGAUACUCACACACA--C----UCACACAUGGGCAGAGCACAGACAGUUGGUGCAAACAACUCUCACAAGACU ...(((..(((((((((((((..((((....(......)...))))))))))))))))).((--.----.......)))))........((.(((((.......))))).))........ ( -31.60) >DroEre_CAF1 18669 120 + 1 GUAGCUCAGUGGGGGUAUCUGAAUAUCCCAGGACCAACUACAGAUACAGAUACUCUCUCACACACACACGCACACAUGUGGAAAGCACAGACAGUUGGUGCAAACAACUCUGACAAGACU ...(((..(.(((((((((((..((((..((......))...))))))))))))))).).....((((........))))...))).((((..((((.......))))))))........ ( -30.20) >DroYak_CAF1 30751 120 + 1 GUAGCCGAGUGUGGGUAUCUGAAUAUCCCAGGACCAACUACAGAUACAGAUACUCCUACACACUUACACACACACAUGUGGAAAGCACAGACAGUUGGUGCAAACAACUCUGACAAGACU ...((.(((((((((((((((..((((..((......))...))))))))))))....))))))).((((......))))....)).((((..((((.......))))))))........ ( -30.50) >consensus GUAGCC_AGUGUGGGUAUCUGAAUAUCCCAGGACCAACCACAGAUACAGAUACUCACACACACACAC__UCACACAUGUGCAAAGCACAGACAGUUGGUGCAAACAACUCUGACAAGACU ........(((((((((((((..((((...............))))))))))))))))).................((((.....))))...(((((.......)))))........... (-19.93 = -21.31 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:51 2006