Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,769,265 – 6,769,362 |
Length | 97 |
Max. P | 0.559947 |
Location | 6,769,265 – 6,769,362 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.50 |
Mean single sequence MFE | -32.10 |
Consensus MFE | -25.93 |
Energy contribution | -26.93 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.45 |
Structure conservation index | 0.81 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.559947 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6769265 97 - 27905053 UUCCGUGAAUUUCAGCUAGAUACUAUUUUGCCAAAAGAUUCUUGUUAACAUUAAGGGGUCUGC---CGAGCCUGCUAACUGGGGUUCAGUUCUAA-GUGCU------------------- .....(((((..(((.(((......(((.((....((((((((..........))))))))))---.)))....))).)))..))))).......-.....------------------- ( -19.80) >DroSec_CAF1 33528 120 - 1 UUCCGUGAAUUUCAGCUAGAUACUAUUUUGCCAACAGAUUCUUGGUAACAUUAAGGGCUCGGCAGACGAGCCUGCUAACUGGGGUUCAGUUCUUAUGCGCUCCAAUUAGAGCAUUAAGUG .....(((((..(((.(((........(((((((.......)))))))......(((((((.....))))))).))).)))..)))))...((((...((((......))))..)))).. ( -38.40) >DroSim_CAF1 38027 119 - 1 UUCCGUGAAUUUCAGCUAGAUACUAUUUUGCCAACAGAUUCUUGGUAACAUUAAGGGCUCGGCAGACGAGCCUGCUAUCUGGGGUUCAGUUCUUAUGCG-UCCAAUUAGGGCAUUAAGUG .....(((((..(((.(((........(((((((.......)))))))......(((((((.....))))))).))).)))..)))))...((((...(-(((.....))))..)))).. ( -38.10) >consensus UUCCGUGAAUUUCAGCUAGAUACUAUUUUGCCAACAGAUUCUUGGUAACAUUAAGGGCUCGGCAGACGAGCCUGCUAACUGGGGUUCAGUUCUUAUGCGCUCCAAUUAG_GCAUUAAGUG .....(((((..(((.(((........(((((((.......)))))))......(((((((.....))))))).))).)))..)))))................................ (-25.93 = -26.93 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:49 2006