Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,767,760 – 6,767,864 |
Length | 104 |
Max. P | 0.661056 |
Location | 6,767,760 – 6,767,864 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.03 |
Mean single sequence MFE | -26.54 |
Consensus MFE | -22.40 |
Energy contribution | -22.76 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.04 |
Mean z-score | -1.39 |
Structure conservation index | 0.84 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661056 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6767760 104 + 27905053 CCCAGGGCGCUGGCACAUUGAUAAAUUAAUGAUUGCCAAGCUGAAAAAGUCGGUUGAAGCGAAG-CAAAGGCGAG---------------UUAUAUAGCAAAUGAGGUGCAGACGAUGGG ((((..(((((((((((((((....))))))..))))..((((.(.((.(((.((...((...)-)..)).))).---------------)).).))))......)))))......)))) ( -28.00) >DroSec_CAF1 31982 103 + 1 CCCAGGGCGCUGGCACAUUGAUAAAUUAAUGAUUGCCAAGCUGGAAAAGUCGGUUGAAGCGAAG-GAAAGGCGAG----------------UAUAUAGCAAAUGAGGUGCAGACGAUGGG ((((..(((((((((((((((....))))))..))))..((((....(.(((.((....(....-)..)).))).----------------)...))))......)))))......)))) ( -28.70) >DroSim_CAF1 36483 103 + 1 CCCAGGGCGCUGGCACAUUGAUAAAUUAAUGAUUGCCAAGCUGGAAAAGUCGGUUGAAGCGAAG-GAAAGGCGAG----------------UAUAUAGCAAAUGAGGUGCAGACGAUGGG ((((..(((((((((((((((....))))))..))))..((((....(.(((.((....(....-)..)).))).----------------)...))))......)))))......)))) ( -28.70) >DroEre_CAF1 16768 103 + 1 CCCUGGGCGCUGGCACAUUGAUAAAUUAAUGAUUGCCAAGCUGGAAAAGUGGGUUAAAGCGGAG-GAAAGGCGA----------------AUAUAUAGCAAAUGAGGUGCAGACGAUGGG (((((.(((((.((.((((((....)))))).(((((..(((.....)))..((....))....-....)))))----------------.......))......)))))...))..))) ( -21.20) >DroYak_CAF1 28796 120 + 1 CCCAGGGCGCUGGCACAUUGAUAAAUUAAUGAUUGCCAAGCUGGAAAAGUGGGUUAAAGCGGAGCGAAAGGCAAGAAUAUACAUACAUACAUAUAUAGCAAAUGAGGUGCAGACGAUGGG ((((..(((((((((((((((....))))))..))))..((((.....(((.((.....(....(....)....).....))...))).......))))......)))))......)))) ( -26.10) >consensus CCCAGGGCGCUGGCACAUUGAUAAAUUAAUGAUUGCCAAGCUGGAAAAGUCGGUUGAAGCGAAG_GAAAGGCGAG________________UAUAUAGCAAAUGAGGUGCAGACGAUGGG ((((..(((((((((((((((....))))))..))))..(((.......(((.......))).......))).................................)))))......)))) (-22.40 = -22.76 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:46 2006