Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,767,385 – 6,767,497 |
Length | 112 |
Max. P | 0.875977 |
Location | 6,767,385 – 6,767,497 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.04 |
Mean single sequence MFE | -26.14 |
Consensus MFE | -22.75 |
Energy contribution | -22.75 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.87 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875977 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6767385 112 + 27905053 --GCG-AGCGAGUGGAGCAAAAA-----AAAAAAUGUUAUCAAAAUUUAUUGAGCGCUGUCAUGAAGCUGUCAAAGUCGAUAUCAAAAACAUUUGAUUUUUGACUUUAUUUUGGCAGCCC --(((-..(((.(((((((....-----......)))).))).......)))..))).........((((((((((((((.((((((....))))))..)))))).....)))))))).. ( -26.00) >DroSec_CAF1 31610 117 + 1 --GCG-AGCGAGUGGGGCAAAAAAAAAAAAAAAAUGUUAUCAAAAUUUAUUGAGCGCUGUCAUGAAGCUGUCAAAGUCGAUAUCAAAAACAUUUGAUUUUUGACUUUAUUUUGGCAGCCC --(((-.((.......)).....................((((......)))).))).........((((((((((((((.((((((....))))))..)))))).....)))))))).. ( -25.00) >DroSim_CAF1 36118 111 + 1 --GCG-AGCGAGUGGGGCAAAAA------AAAAAUGUUAUCAAAAUUUAUUGAGCGCUGUCAUGAAGCUGUCAAAGUCGAUAUCAAAAACAUUUGAUUUUUGACUUUAUUUUGGCAGCCC --(((-..(((.(((((((....------.....)))).))).......)))..))).........((((((((((((((.((((((....))))))..)))))).....)))))))).. ( -25.20) >DroEre_CAF1 16394 111 + 1 AAGCGAAGCGAGUUGGGAAA---------AAAAAUGUUAUCAAAAUUUAUUGAGCGCUGUCAUGAAGCUGUCAAAGUCGAUAUCAAAAACAUUUGAUUUUUGACUUUAUUUUGGCAGCCC .((((.((..((((..((.(---------(......)).))..))))..))...))))........((((((((((((((.((((((....))))))..)))))).....)))))))).. ( -26.90) >DroYak_CAF1 28411 109 + 1 --GCGGAGCGAGUUGGGGAA---------CAAAAUGUUAUCAAAAUUUAUUGAGCGCUGUCAUGAAGCUGUCAAAGUCGAUAUCAAAAACAUUUGAUUUUUGACUUUAUUUUGGCAGCCC --(((.((((..(((.....---------)))..)))).((((......)))).))).........((((((((((((((.((((((....))))))..)))))).....)))))))).. ( -27.60) >consensus __GCG_AGCGAGUGGGGCAAAAA______AAAAAUGUUAUCAAAAUUUAUUGAGCGCUGUCAUGAAGCUGUCAAAGUCGAUAUCAAAAACAUUUGAUUUUUGACUUUAUUUUGGCAGCCC ......((((.............................((((......)))).))))........((((((((((((((.((((((....))))))..)))))).....)))))))).. (-22.75 = -22.75 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:45 2006