Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,765,939 – 6,766,099 |
Length | 160 |
Max. P | 0.745124 |
Location | 6,765,939 – 6,766,059 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -30.80 |
Consensus MFE | -25.72 |
Energy contribution | -26.40 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.06 |
Mean z-score | -1.51 |
Structure conservation index | 0.84 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6765939 120 - 27905053 AGCAUCCACAUGGCGUAUACUUAAUGUGCGAAAAUUUAAUUUAAUGGCUGUAUACCAUAUUUAUGCAAAAAUAGCUGCACGUAGCGAGUGUUGCCUGUGCUUCGCAGCGAAGAACGCCAA ..........((((((...(((....((((((.............((((((....(((....))).....))))))(((((((((....)))))..))))))))))...))).)))))). ( -30.70) >DroSec_CAF1 30128 120 - 1 AGCAUCCACAUGGCGUAUACUUAAUGUGCGAAAAUUUAAUUUAAUGGCUGUAUAACAUAUUUAUGCAAAAAUAGCUGCACGUAGCGAGUGUUGCCUGUGCUUCGCAGCGAAGAACGCCAA ..........((((((...(((....((((((.............((((((....(((....))).....))))))(((((((((....)))))..))))))))))...))).)))))). ( -30.70) >DroSim_CAF1 34640 120 - 1 AGCAUCCACAUGGCGUAUUCUUAAUGUGCGAAAAUUUAAUUUAAUGGAUGUAUAACAUAUUUAUGCAAAAAUACCUGCACGUAGCGAGUGUUGCCUGUGCUUCGCAGCGAAGAACGCCAA ..........((((((..((((....((((((................(((((((.....))))))).........(((((((((....)))))..))))))))))...)))))))))). ( -31.90) >DroEre_CAF1 14919 120 - 1 AGCAUCCACAUGGCGUAUACUUAAUGUGCGAAAAUUUAAUUUAAUGGAUGUAUAACAUAUUUAUGCAAAAAUAGCUGCACGUAGCGAGUGUUGAAUGUGCUUCUCAGGGAAGAACGCCAA ..........((((((((((((.(((((((.............((((((((.....))))))))((.......)))))))))...))))))........((((.....)))).)))))). ( -27.00) >DroYak_CAF1 27011 120 - 1 AGCAUCCACAUGGCGUAUACUUAAUGUGCGAAAAUUUAAUUUAAUAGCAGGGUAACAUAUUUAUGCAAAAAUAGCUGCACGUAGCGAGUGUUGCCUGUGCUUCGCAGGCAAGAGCGCCAA ..........((((((...(((..(.((((((.(((......))).((((((((((((...(((......)))((((....))))..))))))))).))))))))).).))).)))))). ( -33.70) >consensus AGCAUCCACAUGGCGUAUACUUAAUGUGCGAAAAUUUAAUUUAAUGGCUGUAUAACAUAUUUAUGCAAAAAUAGCUGCACGUAGCGAGUGUUGCCUGUGCUUCGCAGCGAAGAACGCCAA ..........((((((...(((....((((((................(((((((.....))))))).........(((((((((....)))))..))))))))))...))).)))))). (-25.72 = -26.40 + 0.68)
Location | 6,765,979 – 6,766,099 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.17 |
Mean single sequence MFE | -27.61 |
Consensus MFE | -22.26 |
Energy contribution | -22.14 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -1.45 |
Structure conservation index | 0.81 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.556958 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6765979 120 + 27905053 GUGCAGCUAUUUUUGCAUAAAUAUGGUAUACAGCCAUUAAAUUAAAUUUUCGCACAUUAAGUAUACGCCAUGUGGAUGCUAAGUCUGUAAGGCGGAAUCGUAUUUACCAGCAAGUGCAUU ((((.((.......))......(((((.....)))))..............))))..........((((.((..(((.....)))..)).)))).....((((((......))))))... ( -28.10) >DroSec_CAF1 30168 120 + 1 GUGCAGCUAUUUUUGCAUAAAUAUGUUAUACAGCCAUUAAAUUAAAUUUUCGCACAUUAAGUAUACGCCAUGUGGAUGCUAAGUCUGCAAGGCAGAAACGUAUUUACCAACAAGUGCAUU (((((((.......)).((((((((((.....((.................)).............(((.((..(((.....)))..)).)))...))))))))))........))))). ( -25.73) >DroSim_CAF1 34680 120 + 1 GUGCAGGUAUUUUUGCAUAAAUAUGUUAUACAUCCAUUAAAUUAAAUUUUCGCACAUUAAGAAUACGCCAUGUGGAUGCUAAGUCUGCAAGGCAGAAACGUAUUUACCAGCAAGUGCAUU (((((......(((((.((((((((((...(((((((...........(((.........)))........))))))).....(((((...)))))))))))))))...)))))))))). ( -26.61) >DroEre_CAF1 14959 120 + 1 GUGCAGCUAUUUUUGCAUAAAUAUGUUAUACAUCCAUUAAAUUAAAUUUUCGCACAUUAAGUAUACGCCAUGUGGAUGCUAAGUCUGCAAGGCAGAAACGUGUAUUCCAGCAAGUGCAUU ((((((......)))))).................................((((...........(((.((..(((.....)))..)).))).......(((......))).))))... ( -24.90) >DroYak_CAF1 27051 120 + 1 GUGCAGCUAUUUUUGCAUAAAUAUGUUACCCUGCUAUUAAAUUAAAUUUUCGCACAUUAAGUAUACGCCAUGUGGAUGCUAAGUGUGCAAGGCAGAAACGUGUUUUCCAGCAAGUGCAUU (((((......(((((..(((((((((...(((((...(((......))).(((((((.(((((.(((...))).))))).)))))))..))))).)))))))))....)))))))))). ( -32.70) >consensus GUGCAGCUAUUUUUGCAUAAAUAUGUUAUACAGCCAUUAAAUUAAAUUUUCGCACAUUAAGUAUACGCCAUGUGGAUGCUAAGUCUGCAAGGCAGAAACGUAUUUACCAGCAAGUGCAUU ((((((......)))))).................................((((...........(((.(((((((.....))))))).)))......((........))..))))... (-22.26 = -22.14 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:44 2006