Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,764,612 – 6,764,726 |
Length | 114 |
Max. P | 0.983108 |
Location | 6,764,612 – 6,764,726 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.78 |
Mean single sequence MFE | -42.54 |
Consensus MFE | -36.12 |
Energy contribution | -36.72 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 0.85 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.983108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6764612 114 + 27905053 UGGGGUUAAGUGUGUGCGGGAUUAAUAGCCGGCACACGCUGUGGAGUGCCUCUGGAUUUGACUCCUGUACCUGUCACCUGGU----CUACUCCCUGAUCCCUCAUCCGCCC--CCAGCAU .((((((((((((((((.((........)).)))))))))..((((((((...((...((((..........)))))).)))----..))))).)))))))......((..--...)).. ( -41.80) >DroSec_CAF1 28734 115 + 1 UGGGGUUAAGUGUGUGCGGGAUUAAUAGCCGGCACACGCUGUGGAGUGCCUCUGGAUUUGACUCCUCUACCUGUCACCUGGU----CUCCU-CCUGAUCCCUCAUCCGCCCCUCCAGCAU .((((((((((((((((.((........)).)))))))))..((((.(((...((...((((..........)))))).)))----)))).-..)))))))......((.......)).. ( -41.20) >DroSim_CAF1 33261 101 + 1 UGGGGUUAAGUGUGUGCGGGAUUAAUAGCCGGCACACGCUGUGGAGUGCCUCUGGAUUUGACUCCUCUACCUGUCACCUGGU----CUCCUGCCUGAUCCC---------------GCAU .((((((((((((((((.((........)).)))))))))..((((.(((...((...((((..........)))))).)))----))))....)))))))---------------.... ( -41.20) >DroEre_CAF1 13570 118 + 1 UGGGGUUAAGUGUGUGCGGGAUUAAUAGCCGGCACACGCUGUGGAGUGCCUCUGGAUUUGACUCUUGUACCUGUCACCUGGUCGGUCGCCACCCUGAUCCCUCAUCCGCCC--CCAGCAU (((((...(((((((((.((........)).)))))))))(((((..(((...((...((((..........)))))).))).(((((......))))).....)))))))--))).... ( -42.60) >DroYak_CAF1 25594 114 + 1 UGGGGUUAAGUGUGUGCGGGAUUAAUAGCCGGCACACGCUGUGGAGUGCCUCUGGAUUUUACUCUUGUACCUGUCACCUGGU----CUCCACCCUGAUCCCUCAAGCGCCC--CCAGCAU .((((((((((((((((.((........)).)))))))))((((((.(((....(((..(((....)))...)))....)))----))))))..)))))))....((....--...)).. ( -45.90) >consensus UGGGGUUAAGUGUGUGCGGGAUUAAUAGCCGGCACACGCUGUGGAGUGCCUCUGGAUUUGACUCCUGUACCUGUCACCUGGU____CUCCUCCCUGAUCCCUCAUCCGCCC__CCAGCAU .((((((((((((((((.((........)).)))))))))..((((.(((...((...((((..........)))))).)))....))))....)))))))................... (-36.12 = -36.72 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:37 2006