Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,763,178 – 6,763,338 |
Length | 160 |
Max. P | 0.998501 |
Location | 6,763,178 – 6,763,298 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.92 |
Mean single sequence MFE | -28.84 |
Consensus MFE | -27.12 |
Energy contribution | -26.88 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.12 |
Mean z-score | -1.96 |
Structure conservation index | 0.94 |
SVM decision value | 3.12 |
SVM RNA-class probability | 0.998501 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6763178 120 - 27905053 UAUUUAAAGUAAGCCAAAGUUAUGCCAAAAAAGGCGCCAUAAGAAUGGUAAAUAAUGUAUGUGUCUUGGGCAGGUGAAGCUGGUGAAAUCGCCAGGGAAAUAAGCAAACUUUAUACCACA ....((((((..(((.(((.((((((......)))(((((....)))))...........))).))).)))........((((((....))))))............))))))....... ( -29.50) >DroSec_CAF1 27457 120 - 1 UAUUUAAAGUAAGCAAAAGUUAUGCCAAAAAAGGCGCCAUAAGAAUGGUAAAUAAUGUAUGUGUCUUGGGCAGGUGAGGCUGGCGAUUUCGCUAGGGAAAUAAGCAAACUUUAUGCCACA ......(((...(((...((((((((......)))(((((....)))))..)))))...)))..))).((((...(((.((((((....))))))(........)...)))..))))... ( -29.80) >DroSim_CAF1 31782 120 - 1 UAUUUAAAGUAAGCAAAAGUUAUGCCAAAAAAGGCGCCAUAAGAAUGGUAAAUAAUGUAUGUGUCUUGGGCAGGUGAAGCUGGCGAUUUCGCUAGGGAAAUAAGCAAACUUUAUGCCACA ............(((((((((.((((....(((((((.(((...((........)).)))))))))).)))).......((((((....))))))...........)))))).))).... ( -29.70) >DroEre_CAF1 11837 120 - 1 UAUUUAAAGUAAGCCAAAGUUAUGCCAAAAAAGGCGCCAUAAGAAUGGUAAAUAAUGCAUGUGUCUUGGGCAGGUGAAGCUGGCGAAAUCGCUGGGGAAAUAAGCAAACUUUAUGACAGA ....((((((..(((........(((......)))(((.(((((...(((.....))).....)))))))).)))....(..(((....)))..)............))))))....... ( -29.50) >DroYak_CAF1 23966 120 - 1 UAUUUAAAGUAAGCCAAAGUUAUGCCAAAAAAGGCGCCAUAAGAAUGGUAAAUAAUGUAUGUGUCUUGGGCAGGUGAAGCUGGCGAAAUCACAGGGGAAAUAAGCAAACUUUAUGCCAGA ....((((((..((....((((((((......)))(((((....)))))..)))))...((((..((.(.(((......))).).))..))))..........))..))))))....... ( -25.70) >consensus UAUUUAAAGUAAGCCAAAGUUAUGCCAAAAAAGGCGCCAUAAGAAUGGUAAAUAAUGUAUGUGUCUUGGGCAGGUGAAGCUGGCGAAAUCGCUAGGGAAAUAAGCAAACUUUAUGCCACA ....((((((..((....((((((((......)))(((((....)))))..))))).(((.(((.....))).)))...((((((....))))))........))..))))))....... (-27.12 = -26.88 + -0.24)
Location | 6,763,218 – 6,763,338 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.67 |
Mean single sequence MFE | -23.50 |
Consensus MFE | -20.96 |
Energy contribution | -21.24 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -1.63 |
Structure conservation index | 0.89 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6763218 120 + 27905053 GCUUCACCUGCCCAAGACACAUACAUUAUUUACCAUUCUUAUGGCGCCUUUUUUGGCAUAACUUUGGCUUACUUUAAAUAAAUCAACAUUGGCCAGGCCAGACACGGCCACUCCCACUUU .........(((.(((................((((....)))).(((......)))....))).))).....................(((...((((......))))....))).... ( -23.70) >DroSec_CAF1 27497 120 + 1 GCCUCACCUGCCCAAGACACAUACAUUAUUUACCAUUCUUAUGGCGCCUUUUUUGGCAUAACUUUUGCUUACUUUAAAUAAAUCAACGCUGGCCCGGCCAGACACGGCAACUCCCAUUUG ........((((.............(((((((((((....)))).(((......))).................)))))))......((((((...))))).)..))))........... ( -23.00) >DroSim_CAF1 31822 120 + 1 GCUUCACCUGCCCAAGACACAUACAUUAUUUACCAUUCUUAUGGCGCCUUUUUUGGCAUAACUUUUGCUUACUUUAAAUAAAUCAACGCUGGCCAGGCCAGACACGGCAACUCCCACUUU ........((((.............(((((((((((....)))).(((......))).................)))))))......((((((...))))).)..))))........... ( -23.00) >DroEre_CAF1 11877 120 + 1 GCUUCACCUGCCCAAGACACAUGCAUUAUUUACCAUUCUUAUGGCGCCUUUUUUGGCAUAACUUUGGCUUACUUUAAAUAAAUCAACGCCGGCCAGGCCAGACACGGCAGCUCCCACUUU .......(((((.((((...(((..........))))))).(((((((......)))......((((((.....................)))))))))).....))))).......... ( -23.80) >DroYak_CAF1 24006 120 + 1 GCUUCACCUGCCCAAGACACAUACAUUAUUUACCAUUCUUAUGGCGCCUUUUUUGGCAUAACUUUGGCUUACUUUAAAUAAAUCAACGCUGGCCCUGCCAGACACGGCAACUCCCACUUU (((......(((.(((................((((....)))).(((......)))....))).)))...................((((((...))))).)..)))............ ( -24.00) >consensus GCUUCACCUGCCCAAGACACAUACAUUAUUUACCAUUCUUAUGGCGCCUUUUUUGGCAUAACUUUGGCUUACUUUAAAUAAAUCAACGCUGGCCAGGCCAGACACGGCAACUCCCACUUU (((......(((.(((................((((....)))).(((......)))....))).)))....................(((((...)))))....)))............ (-20.96 = -21.24 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:33 2006