Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,762,628 – 6,762,740 |
Length | 112 |
Max. P | 0.767791 |
Location | 6,762,628 – 6,762,740 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.62 |
Mean single sequence MFE | -30.88 |
Consensus MFE | -29.06 |
Energy contribution | -29.10 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.26 |
Structure conservation index | 0.94 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6762628 112 - 27905053 CAU-----ACAUCUGC---UUCUCAGUGAAGAGUCGCAAGCACAUGGCGGCGCAUUGUUAUUAGCGCUAAGUUGCCAUCAAUUUAAGCAAACUAAUCUGCUAAGGCUUGACGCUGGAAAC ...-----........---(((.(((((..(((((........((((((((((..........))))).....))))).......((((........))))..)))))..)))))))).. ( -29.50) >DroSec_CAF1 26871 117 - 1 GAUAUGGUACAUCUAC---UUCUCAGUGAAGAGCCGCAAACACAUGGCGGCGCAUUGUUAUUAGCGCUAAGUUGCCAUCAAUUUAAGCAAACUAAUCUGCUCCGGCUUGACGCUGGAAAC ................---(((.(((((..((((((.......((((((((((..........))))).....))))).......((((........)))).))))))..)))))))).. ( -32.80) >DroSim_CAF1 31200 112 - 1 GAU-----ACAUCUAC---UUCUCAGUAAAGAGCCGCAAACACAUGGCGGCGCAUUGUUAUUAGCGCUAAGUUGCCAUCAAUUUAAGCAAACUAAUCUGCUCCGGCUUGACGCUGGAAAC ...-----........---(((.((((...((((((.......((((((((((..........))))).....))))).......((((........)))).))))))...))))))).. ( -30.20) >DroEre_CAF1 11302 112 - 1 GUA-----ACACGUAG---UUCUCAGUGAAGAGCCACGAACACAUGGCGGCGCAUUGUUAUUAGCGCUAAGUUGCCAUCAAUUUAAGCAAACUAAUCUGCUCCGGCUUGACGCUGGCAAC ...-----.......(---((.((((((..(((((........((((((((((..........))))).....))))).......((((........))))..)))))..)))))).))) ( -31.60) >DroYak_CAF1 23469 115 - 1 GUA-----ACCUCUACCUCUUCUCAGUGAAGAGCCACAGACACAUGGCGGCGCAUUGUUAUUAGCGCUAAGUUGCCAUCAAUUUAAGCAAACUAAUCUGCUCCGGCUUGACGCUGGCAAC ...-----.........(((((.....)))))((((........))))(((((..........)))))..(((((((((((((..((((........))))..)).))))...))))))) ( -30.30) >consensus GAU_____ACAUCUAC___UUCUCAGUGAAGAGCCGCAAACACAUGGCGGCGCAUUGUUAUUAGCGCUAAGUUGCCAUCAAUUUAAGCAAACUAAUCUGCUCCGGCUUGACGCUGGAAAC ......................((((((..(((((........((((((((((..........))))).....))))).......((((........))))..)))))..)))))).... (-29.06 = -29.10 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:27 2006