Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,761,282 – 6,761,399 |
Length | 117 |
Max. P | 0.680369 |
Location | 6,761,282 – 6,761,399 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.88 |
Mean single sequence MFE | -25.16 |
Consensus MFE | -21.66 |
Energy contribution | -21.58 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.34 |
Structure conservation index | 0.86 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6761282 117 + 27905053 UAGCAAUUAAAUCAGCUAACAGUUUUAUGG-GGCCAAACGUGGGAAAGCUGAAGAGAAAAAGUGAAAAAAAC--CCACGUUCAGCAAUCAUUUUGCAUUGGCGAUGUGAUAGAAAGUCAA ((((..........))))......(((((.-.((((((((((((...(((..........)))........)--))))))...((((.....)))).)))))..)))))........... ( -25.00) >DroSec_CAF1 25496 116 + 1 UAGCAAUUAAAUCAGCUAACAGUUUUAUGG-GGCCAAACGUGGGAAAGCUGAAGAGAAAAAGUGAAAAAAAU---CGCGUUCAGCAAUCAUUUUGCAUUGGCGAUGUGAUAGAAAGUCAA ..((.......((((((.....(((((((.-.......))))))).))))))...(((...((((......)---))).))).)).(((((.((((....)))).))))).......... ( -26.80) >DroSim_CAF1 29878 119 + 1 UAGCAAUUAAAUCAGCUAACAGUUUUAUGG-GGCCAAACGUGGGAAAGCUGAAGAGAAAAAGUGAAAAAAAACCCCGCGUUCAGCAAUCAUUUUGCAUUGGCGAUGUGAUAGAAAGUCAA ..((.......((((((.....(((((((.-.......))))))).))))))...(((...(((...........))).))).)).(((((.((((....)))).))))).......... ( -24.40) >DroEre_CAF1 9972 118 + 1 UAGCAAUUAAAUCAGCUAACAGUUUUAUAG-GGCCAAAUGUGGGAAAACUGAAGAGAAAAAGUGAAAA-AAAGCUCGCGUUCAGCAAUCAUUUUGCAUUGGCGAUGUGAUAGAAAGUCAA ...........((.(((..(((((((....-..(((....))).)))))))....(((...((((...-.....)))).)))))).(((((.((((....)))).))))).))....... ( -23.00) >DroYak_CAF1 22122 120 + 1 UGGCAAUUAAAUCAGCUAACAGUUUUAUGGGGGCCAAACGUGGGAAAGCUGAAGAGAAAAAGUGAAAAAAAAGCUGGCGUUCAGCAAUCAUUUUGCAUUGGCGAUGUGAUAGAAAGUCAA ((((.......((((((.....(((((((.........))))))).))))))....................((((.....)))).(((((.((((....)))).))))).....)))). ( -26.60) >consensus UAGCAAUUAAAUCAGCUAACAGUUUUAUGG_GGCCAAACGUGGGAAAGCUGAAGAGAAAAAGUGAAAAAAAA_CCCGCGUUCAGCAAUCAUUUUGCAUUGGCGAUGUGAUAGAAAGUCAA ..((.......((((((.....(((((((.........))))))).))))))...(((...(((...........))).))).)).(((((.((((....)))).))))).......... (-21.66 = -21.58 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:19 2006