Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,759,855 – 6,759,960 |
Length | 105 |
Max. P | 0.558758 |
Location | 6,759,855 – 6,759,960 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 93.13 |
Mean single sequence MFE | -20.28 |
Consensus MFE | -17.80 |
Energy contribution | -17.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.80 |
Structure conservation index | 0.88 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558758 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6759855 105 + 27905053 CUCAUCAACGUCAGGAGCAGCAAAAACACUAGCUGGCUUUUGGAAAAA-AA------AAAAACUGCAAAAAGCAUGGCUAAAACUCAAAAACAACUAAACGAGCACUUGGCA .........((((((.((.(......)..((((((((((((.......-..------..........)))))).))))))......................)).)))))). ( -18.41) >DroSec_CAF1 24072 111 + 1 CUCAUCAACGUCAGGAGCAGCAAAAACACUAGCUGGCUUUUGGAAAAAAAAA-GGGUAAAAACUGCAAAAAGCAUGGCUAAAACUCAAAAACAACUAAACGAGCACUUGGCA .........((((((..((((..........))))((((((((.........-((((.....((((.....))).)......))))........))))..)))).)))))). ( -19.83) >DroEre_CAF1 8610 111 + 1 CUCAUCAACGUCAGGAGCAGCAAAAACACUAGCUGGCUUUUGGGUAAAAAAAGGGGAAAAAAGUGCAA-AAGCAUGGCUAAAACUCAAAAACAACUAAACGAGCACUUGGCA .........((((((..((((..........))))((((...(((.......(((.......((((..-..))))........))).......)))....)))).)))))). ( -22.60) >consensus CUCAUCAACGUCAGGAGCAGCAAAAACACUAGCUGGCUUUUGGAAAAAAAAA_GGG_AAAAACUGCAAAAAGCAUGGCUAAAACUCAAAAACAACUAAACGAGCACUUGGCA .........((((((..((((..........))))((((((((....................(((.....)))(((.......))).......))))..)))).)))))). (-17.80 = -17.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:13 2006