Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,757,659 – 6,757,858 |
Length | 199 |
Max. P | 0.997512 |
Location | 6,757,659 – 6,757,779 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.00 |
Mean single sequence MFE | -27.86 |
Consensus MFE | -25.02 |
Energy contribution | -25.42 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.33 |
Structure conservation index | 0.90 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593740 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6757659 120 + 27905053 GGCUUUUGUAAUAAUUCAAUGAGCGCUGCUUCAUUUGUCACAUUGCUCAUACGCCAUGUGCAACGGAAACGGAAACCUCGGCGACCAAGUGAAAGUAUUCAUUAUACUUACAUUACUUCC .(((((((........))).))))((((.(((..(((.(((((.((......)).))))))))((....)))))....)))).....((((.((((((.....)))))).))))...... ( -28.40) >DroSec_CAF1 21829 120 + 1 GGCUUUUGUAAUAAUUCAAUGAGCGCUGCUUCAUUUGUCACAUUGCUCAUACGCCAUGUGCAACGGAAUCAUAAACCUCGGCGUCCAAGGGAAAGUAUUCAUUAUACUUACAUUACUUCC .......(((((..(((..((..(((((......(((.(((((.((......)).)))))))).((.........)).)))))..))..)))((((((.....))))))..))))).... ( -25.70) >DroSim_CAF1 26202 120 + 1 GGCUUUUGUAAUAAUUCAAUGAGCGCUGCUUCAUUUGUCACAUUGCUCAUACGCCAUGUGCAACGGAAACGGAAACCUCGGCGACCAAGUGAAAGUAUUCAUUAUACUUACAUUACUUCC .(((((((........))).))))((((.(((..(((.(((((.((......)).))))))))((....)))))....)))).....((((.((((((.....)))))).))))...... ( -28.40) >DroEre_CAF1 6294 120 + 1 GGCUUUUGUAAUAAUUCAAUGAGCGCUGCUUCAUUUGUCACAUUGCUCAUACGCCAUGUGCAACGGAAACGGAAACCUCGGCGACCAAGUGAAAGUAUUCAUUAUACUUACAUUAUUUCC .(((((((........))).))))((((.(((..(((.(((((.((......)).))))))))((....)))))....)))).....((((.((((((.....)))))).))))...... ( -28.40) >DroYak_CAF1 18284 120 + 1 GGCUUUUGUAAUAAUUCAAUGAGCGCUGCUUCAUUUGUCACAUUGCUCAUACGCCAUGUGCAACGGAAACGGAAACCUCGGCGACCAAGUGAAAGUAUUCAUUAUACUUACAUUACUUCC .(((((((........))).))))((((.(((..(((.(((((.((......)).))))))))((....)))))....)))).....((((.((((((.....)))))).))))...... ( -28.40) >consensus GGCUUUUGUAAUAAUUCAAUGAGCGCUGCUUCAUUUGUCACAUUGCUCAUACGCCAUGUGCAACGGAAACGGAAACCUCGGCGACCAAGUGAAAGUAUUCAUUAUACUUACAUUACUUCC .(((((((........))).))))((((......(((.(((((.((......)).))))))))((....)).......)))).....((((.((((((.....)))))).))))...... (-25.02 = -25.42 + 0.40)
Location | 6,757,739 – 6,757,858 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.05 |
Mean single sequence MFE | -19.18 |
Consensus MFE | -15.15 |
Energy contribution | -15.40 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -3.01 |
Structure conservation index | 0.79 |
SVM decision value | 2.87 |
SVM RNA-class probability | 0.997512 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6757739 119 + 27905053 GCGACCAAGUGAAAGUAUUCAUUAUACUUACAUUACUUCCC-CAGCUUCCUUUACUUCGCCUUCGUCCUUCAACGACCGCUUUCCCUCCCCUUUCUCCCAUUUUCUUGGUCGUCAUUUCG (((((((((((.((((((.....)))))).)).........-................((..((((......))))..))........................)))))))))....... ( -22.50) >DroSec_CAF1 21909 119 + 1 GCGUCCAAGGGAAAGUAUUCAUUAUACUUACAUUACUUCCC-CAGCUUCCUUUACUUCUCCUUCGUCGUUCAACAACCGCUCUCCCUCCCCUUCCUCCCAUUUUCUUGGUCGUCAUUUCG (((.(((((..(((((((.....))))))............-......................((.(((....))).)).....................)..))))).)))....... ( -16.80) >DroEre_CAF1 6374 101 + 1 GCGACCAAGUGAAAGUAUUCAUUAUACUUACAUUAUUUCCA-CAGCUUCCUUGCC---------------CAAC---CGCUUUCUCUCCCAUUUCUUGCAUUUUCUUGGUCGUCAUUUCG (((((((((((.((((((.....)))))).)).........-..((......)).---------------....---...........................)))))))))....... ( -18.70) >DroYak_CAF1 18364 105 + 1 GCGACCAAGUGAAAGUAUUCAUUAUACUUACAUUACUUCCUCCAGCUUCCUUGCC---------------CAACCACCGCUUUCUCUACCAUCUCUCGCAUUUUCUUGGUCGUCAUUUCG (((((((((((.((((((.....)))))).))............((......)).---------------..................................)))))))))....... ( -18.70) >consensus GCGACCAAGUGAAAGUAUUCAUUAUACUUACAUUACUUCCC_CAGCUUCCUUGAC_______________CAAC_ACCGCUUUCCCUCCCAUUUCUCCCAUUUUCUUGGUCGUCAUUUCG (((((((((..(((((((.....))))))..............(((................................)))....................)..)))))))))....... (-15.15 = -15.40 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:10 2006