Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,757,429 – 6,757,549 |
Length | 120 |
Max. P | 0.939859 |
Location | 6,757,429 – 6,757,549 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.00 |
Mean single sequence MFE | -39.32 |
Consensus MFE | -37.98 |
Energy contribution | -37.18 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.17 |
Mean z-score | -1.37 |
Structure conservation index | 0.97 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939859 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6757429 120 + 27905053 UUCGAGCGGGGGCCAAAACGGCUCUCGAGUUUUUUGGCAGCCAAAACCUUGUGGCUGUUUUGGACGGGCCAAUUACGAUAAUUGUCGCGUUCAUUUUUCAUUUGACAACGUGCGACAGUU .(((..((((((((.....)))))))).((((...((((((((........))))))))..))))..........))).((((((((((.(((.........))).....)))))))))) ( -40.20) >DroSec_CAF1 21592 120 + 1 UUCGAGCGGGGGCCAAAACGGCUGUUGAGUUUUUUGGCAGCCGAAACCUUGUGGCUGCUUUGGACGGGCCAAUUACGAUAAUUGUCGCGUUCAUUUUUCAUUUGACAACGUGCGACAGUU .(((.(((..((((.....))))((..(((.....((((((((........)))))))).((((((.(.((((((...)))))).).))))))......)))..))..))).)))..... ( -38.90) >DroSim_CAF1 25958 120 + 1 UUUGAGCGGGGGCCAAAACGGCUCUUGAGUUUUUUGGCAGCCGAAACCUUGUGGCUGCUUUGGACGGGCCAAUUACGAUAAUUGUCGCGUUCAUUUUUCAUUUGACAACGUGCGACAGUU .(((.(((((((((.....)))))))..((((...((((((((........))))))))..))))..))))).......((((((((((.(((.........))).....)))))))))) ( -39.00) >DroEre_CAF1 6042 119 + 1 UUCGAGUGG-GGCCAAAACGGUUCUCGGGUUUUUUGGCAGCCGAAACCUUGUGGCUGCUUUGGACGGGCCAAUUACGAUAAUUGUCGCGUUCAUUUUUCAUUUGACAACGUGCGACAGUU .((((((..-((((....((.....)).((((...((((((((........))))))))..)))).)))).))).))).((((((((((.(((.........))).....)))))))))) ( -37.60) >DroYak_CAF1 18006 120 + 1 UUCGAGUGGGGGCCAAACCGGUUCUCGGGUUUUUUGGCAGCCGAAACCUUGUGGCUGCUUUGGACGGGCCAAUUACGAUAAUUGUCGCGUUCAUUUUUCAUUUGACAACGUGCGACAGUU .((((((...((((...(((.....)))((((...((((((((........))))))))..)))).)))).))).))).((((((((((.(((.........))).....)))))))))) ( -40.90) >consensus UUCGAGCGGGGGCCAAAACGGCUCUCGAGUUUUUUGGCAGCCGAAACCUUGUGGCUGCUUUGGACGGGCCAAUUACGAUAAUUGUCGCGUUCAUUUUUCAUUUGACAACGUGCGACAGUU .(((..((((((((.....)))))))).((((...((((((((........))))))))..))))..........))).((((((((((.(((.........))).....)))))))))) (-37.98 = -37.18 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:08 2006