Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,756,555 – 6,756,674 |
Length | 119 |
Max. P | 0.573081 |
Location | 6,756,555 – 6,756,674 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 84.06 |
Mean single sequence MFE | -25.07 |
Consensus MFE | -19.71 |
Energy contribution | -19.43 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.07 |
Mean z-score | -1.56 |
Structure conservation index | 0.79 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506904 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6756555 119 + 27905053 UCAGUUUUUUCCACCGGUUUUCCUUACCCUGCAGCUUAACUGCCCAAGUGGGUAGAUAGGGUUUCUUAAGAAUAUGGAAAGUUAUGUAUCAUAUCUGAUAUAUAUGUAUACUCUAUUUA ......(((((((...(((((....((((((........((((((....)))))).))))))......))))).))))))).(((((((((....)))))))))............... ( -28.40) >DroSec_CAF1 20737 103 + 1 UCGGUUUUUUCCACCGGCUUUCCAUACCCUGCAGCUUAACUGCCAAAAAGGGUAGAUAGGGUUUCUUAGAAAUGUAG------AUGUAUCAUAUCUGAUAUAU------ACUCUA---- (((((.......))))).......((((((((((.....)))).....))))))..((((((.(((((....)).))------)(((((((....))))))).------))))))---- ( -24.40) >DroSim_CAF1 25117 107 + 1 UCAGUUUUUUCCACCGGCUUUCCAUACCCUGCAGCUUAACUGCCAAAGUGGGUAGAUAGGGUUCCUUAAGAAUGUAG------AUGUAUCAUAUCUGAUAUAU------ACUCUAUUUU ...............((...(((.(((((.((((.....))))......)))))....)))..))...((((((.((------((((((((....))))))))------.)).)))))) ( -22.40) >consensus UCAGUUUUUUCCACCGGCUUUCCAUACCCUGCAGCUUAACUGCCAAAGUGGGUAGAUAGGGUUUCUUAAGAAUGUAG______AUGUAUCAUAUCUGAUAUAU______ACUCUAUUU_ ...((((((...(((((....)).(((((.((((.....))))......))))).....))).....)))))).........(((((((((....)))))))))............... (-19.71 = -19.43 + -0.27)
Location | 6,756,555 – 6,756,674 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 84.06 |
Mean single sequence MFE | -24.67 |
Consensus MFE | -19.36 |
Energy contribution | -18.70 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.12 |
Mean z-score | -1.66 |
Structure conservation index | 0.78 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6756555 119 - 27905053 UAAAUAGAGUAUACAUAUAUAUCAGAUAUGAUACAUAACUUUCCAUAUUCUUAAGAAACCCUAUCUACCCACUUGGGCAGUUAAGCUGCAGGGUAAGGAAAACCGGUGGAAAAAACUGA ....(((.((((.(((((.......))))))))).....(((((((...........(((((......((....))((((.....)))))))))..((....)).)))))))...))). ( -28.50) >DroSec_CAF1 20737 103 - 1 ----UAGAGU------AUAUAUCAGAUAUGAUACAU------CUACAUUUCUAAGAAACCCUAUCUACCCUUUUUGGCAGUUAAGCUGCAGGGUAUGGAAAGCCGGUGGAAAAAACCGA ----((((..------...(((((....)))))..)------)))..((((((((.....))...((((((.....((((.....))))))))))))))))..((((.......)))). ( -23.50) >DroSim_CAF1 25117 107 - 1 AAAAUAGAGU------AUAUAUCAGAUAUGAUACAU------CUACAUUCUUAAGGAACCCUAUCUACCCACUUUGGCAGUUAAGCUGCAGGGUAUGGAAAGCCGGUGGAAAAAACUGA ....((((..------...(((((....)))))..)------)))..((((...((...((....(((((......((((.....)))).))))).))....))...))))........ ( -22.00) >consensus _AAAUAGAGU______AUAUAUCAGAUAUGAUACAU______CUACAUUCUUAAGAAACCCUAUCUACCCACUUUGGCAGUUAAGCUGCAGGGUAUGGAAAGCCGGUGGAAAAAACUGA ....(((.((.........(((((....)))))..............(((....))))).)))((((((.......((((.....))))..(((.......)))))))))......... (-19.36 = -18.70 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:03 2006