Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,755,944 – 6,756,058 |
Length | 114 |
Max. P | 0.654135 |
Location | 6,755,944 – 6,756,058 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.31 |
Mean single sequence MFE | -28.06 |
Consensus MFE | -27.20 |
Energy contribution | -27.04 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.03 |
Mean z-score | -1.11 |
Structure conservation index | 0.97 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6755944 114 + 27905053 UUAGCUUUGGAUUCUUGGAUUCCCGGGCUUAACUUCGGCUUCUGCAACGACCGCAGCA------CAAAAAUAUUUUCAAUUAUGAUGCCGGAGUGAGGAACUCUAGAAUUUUUCAAUUAA ..((((..(((.((...)).)))..))))..((((((((..((((.......))))..------...........(((....))).))))))))((((((........))))))...... ( -26.70) >DroSec_CAF1 20105 114 + 1 UUAGCUUUGGAUUCUUGGAUUCCCGGGCUUAACUUCGGCUUCUGCAACGACCGCAGCA------CAAAAAUAUUUUCAAUUAUGAUGCCGGAGUGAGGAACUCUAGAAUUUUUCAAUUAA ..((((..(((.((...)).)))..))))..((((((((..((((.......))))..------...........(((....))).))))))))((((((........))))))...... ( -26.70) >DroSim_CAF1 24485 114 + 1 UUAGCUUUGGAUUCUUGGAUUCCCGGGCUUAACUUCGGCUUCUGCAACGACCGCAGCA------CAAAAAUAUUUUCAAUUAUGAUGCCGGAGUGAGGAACUCUAGAAUUUUUCAAUUAA ..((((..(((.((...)).)))..))))..((((((((..((((.......))))..------...........(((....))).))))))))((((((........))))))...... ( -26.70) >DroEre_CAF1 4519 114 + 1 UUAGCUCUGGAUUCUUGGAUUCCCGGGCUGAACUUCGGCUUCUGCAACGACCGCAGCA------CAAAAAUAUUUUCAAUUAUGAUGCCGGAGUGAGGAACUCUAGAAUUUUUCAAUUAA (((((((.(((.((...)).))).)))))))((((((((..((((.......))))..------...........(((....))).))))))))((((((........))))))...... ( -30.90) >DroYak_CAF1 16487 120 + 1 UUAGCUUUGGAUUCUUGGAUUCCCGGGCUCAACUUCGGCAACUGCAACGACCGCAGCACAAGCACAAAAAUAUUUUCAAUUAUGAUGCCGGAGUGAGGAACUCUAGAAUUUUUCAAUUAA .....((((((..(((((....)))))((((.((((((((.((((.......))))...................(((....)))))))))))))))....))))))............. ( -29.30) >consensus UUAGCUUUGGAUUCUUGGAUUCCCGGGCUUAACUUCGGCUUCUGCAACGACCGCAGCA______CAAAAAUAUUUUCAAUUAUGAUGCCGGAGUGAGGAACUCUAGAAUUUUUCAAUUAA ..(((((.(((.((...)).))).)))))..((((((((..((((.......))))...................(((....))).))))))))((((((........))))))...... (-27.20 = -27.04 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:57 2006