Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,754,234 – 6,754,423 |
Length | 189 |
Max. P | 0.999306 |
Location | 6,754,234 – 6,754,343 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.29 |
Mean single sequence MFE | -44.68 |
Consensus MFE | -37.88 |
Energy contribution | -37.96 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.04 |
Mean z-score | -2.90 |
Structure conservation index | 0.85 |
SVM decision value | 3.50 |
SVM RNA-class probability | 0.999306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6754234 109 + 27905053 CGACAUUCUAUAAAUUAAUCAGACGGAGUGCUCUUAGCUCCGCCAGGAGCCAGAAGCCCGGAGCAGG-----------CAGCGAGGAGCACUUCCUGGCCAGCCUCCCGCUGGCAACUCA ...................(((..(((((((((((.((((((((.((.((.....)))).).)).))-----------.))).))))))))))))))((((((.....))))))...... ( -42.90) >DroSec_CAF1 18399 109 + 1 CGACAUUCUAUAAAUUAAUCAGACGGAGUGCUCUUAGCUCCGCCAGGAGCCAGAAGCCCGGAGCAGC-----------CAGCGAGGAGCACUUCCUGGCCAGCCUCCCGCUGGCAACUCA ...................(((..(((((((((((.(((((....))))).....((..((.....)-----------).)).))))))))))))))((((((.....))))))...... ( -41.30) >DroSim_CAF1 22800 109 + 1 CGACAUUCUAUAAAUUAAUCAGACGGAGUGCUCUUAGCUCCGCCAGGAGCCAGAAGCCCGGAGCAGC-----------CAGCGAGGAGCACUUCCUGGCCAGCCUCCCGCUGGCAACUCA ...................(((..(((((((((((.(((((....))))).....((..((.....)-----------).)).))))))))))))))((((((.....))))))...... ( -41.30) >DroEre_CAF1 2787 120 + 1 CGACAUUCUAUAAAUUAAUCAGACGGAGUGCUCUUAGCUCCGCUAGGAGCCAGAAGCCCGGAGAAGCCAGCGAGGAACCAGCGAGGAGCACUUCCUGGCCAGCCUCCCGCUGGCAACUCA .......................(((.(((((((((((...))))))))).....)))))(((..((((((((((..((((.((((....))))))))....))))..))))))..))). ( -47.40) >DroYak_CAF1 14723 120 + 1 CGACAUUCUAUAAAUUAAUCAGACGGAGUGCUCUUAGCUCCGCCAGGAGCAAGAAGCCCGGAGUAUCCAGCGAGGAGCCAGCGAGGAGCACUUCCUGGCCAGCCUCCCGCUGGCAACUCA .......................(((.((..((((.(((((....))))))))).)))))((((..((((((.(((((..((.(((((...))))).))..).))))))))))..)))). ( -50.50) >consensus CGACAUUCUAUAAAUUAAUCAGACGGAGUGCUCUUAGCUCCGCCAGGAGCCAGAAGCCCGGAGCAGC___________CAGCGAGGAGCACUUCCUGGCCAGCCUCCCGCUGGCAACUCA ...................(((..(((((((((((.(((((....))))).....((.....))...................))))))))))))))((((((.....))))))...... (-37.88 = -37.96 + 0.08)
Location | 6,754,234 – 6,754,343 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.29 |
Mean single sequence MFE | -49.76 |
Consensus MFE | -36.86 |
Energy contribution | -37.06 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.53 |
Structure conservation index | 0.74 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878339 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6754234 109 - 27905053 UGAGUUGCCAGCGGGAGGCUGGCCAGGAAGUGCUCCUCGCUG-----------CCUGCUCCGGGCUUCUGGCUCCUGGCGGAGCUAAGAGCACUCCGUCUGAUUAAUUUAUAGAAUGUCG ((((((((((((.....))))))((((.(((((((......(-----------((((...)))))...(((((((....))))))).)))))))...))))...)))))).......... ( -43.20) >DroSec_CAF1 18399 109 - 1 UGAGUUGCCAGCGGGAGGCUGGCCAGGAAGUGCUCCUCGCUG-----------GCUGCUCCGGGCUUCUGGCUCCUGGCGGAGCUAAGAGCACUCCGUCUGAUUAAUUUAUAGAAUGUCG .((((.((((((((((((((........))).)))).)))))-----------)).))))((((((..(((((((....)))))))..)))...)))....................... ( -48.00) >DroSim_CAF1 22800 109 - 1 UGAGUUGCCAGCGGGAGGCUGGCCAGGAAGUGCUCCUCGCUG-----------GCUGCUCCGGGCUUCUGGCUCCUGGCGGAGCUAAGAGCACUCCGUCUGAUUAAUUUAUAGAAUGUCG .((((.((((((((((((((........))).)))).)))))-----------)).))))((((((..(((((((....)))))))..)))...)))....................... ( -48.00) >DroEre_CAF1 2787 120 - 1 UGAGUUGCCAGCGGGAGGCUGGCCAGGAAGUGCUCCUCGCUGGUUCCUCGCUGGCUUCUCCGGGCUUCUGGCUCCUAGCGGAGCUAAGAGCACUCCGUCUGAUUAAUUUAUAGAAUGUCG .(((..(((((((((..((..((.((((.....)))).))..))..)))))))))..)))((((((..(((((((....)))))))..)))...)))....................... ( -56.90) >DroYak_CAF1 14723 120 - 1 UGAGUUGCCAGCGGGAGGCUGGCCAGGAAGUGCUCCUCGCUGGCUCCUCGCUGGAUACUCCGGGCUUCUUGCUCCUGGCGGAGCUAAGAGCACUCCGUCUGAUUAAUUUAUAGAAUGUCG .((((..((((((((..((..((.((((.....)))).))..))..))))))))..))))((((((.((((((((....))))).))))))...)))....................... ( -52.70) >consensus UGAGUUGCCAGCGGGAGGCUGGCCAGGAAGUGCUCCUCGCUG___________GCUGCUCCGGGCUUCUGGCUCCUGGCGGAGCUAAGAGCACUCCGUCUGAUUAAUUUAUAGAAUGUCG ((((((((((((.....))))))((((.(((((((((((..(...............)..))))....(((((((....))))))).)))))))...))))...)))))).......... (-36.86 = -37.06 + 0.20)
Location | 6,754,303 – 6,754,423 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.50 |
Mean single sequence MFE | -35.36 |
Consensus MFE | -34.88 |
Energy contribution | -34.64 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.02 |
Mean z-score | -1.83 |
Structure conservation index | 0.99 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983175 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6754303 120 + 27905053 GCGAGGAGCACUUCCUGGCCAGCCUCCCGCUGGCAACUCAAUCGCGAUAAAGCCCCAGGUGAAUUAUAGUUAUUUGAUUUUGUUUUGGUGAUUUGUUUGCUUGAGUUUCAGUUCUUUAAA ..(((((((........((((((.....))))))(((((((..((((((((.(.(((((.((((((........))))))...))))).).)))).)))))))))))...)))))))... ( -35.60) >DroSec_CAF1 18468 120 + 1 GCGAGGAGCACUUCCUGGCCAGCCUCCCGCUGGCAACUCAAUCGCGAUAAAGCCCCAGGUGAAUUAUAGUUAUUUGAUUUUGUUUUGGUGAUUUGUUUGCUUGAGUUUCAGUUCUUUAAA ..(((((((........((((((.....))))))(((((((..((((((((.(.(((((.((((((........))))))...))))).).)))).)))))))))))...)))))))... ( -35.60) >DroSim_CAF1 22869 120 + 1 GCGAGGAGCACUUCCUGGCCAGCCUCCCGCUGGCAACUCAAUCGCGAUAAAGCCUCAGGUGAAUUAUAGUUAUUUGAUUUUGUUUUGGUGAUUUGUUUGCUUGAGUUUCAGUUCUUUAAA ..(((((((........((((((.....)))))).........((......))((((((..(((...((((((..((......))..)))))).)))..)))))).....)))))))... ( -35.00) >DroEre_CAF1 2867 120 + 1 GCGAGGAGCACUUCCUGGCCAGCCUCCCGCUGGCAACUCAAUCGCGAUAAAGCCCCAGGUGAAUUAUAGUUAUUUGAUUUUGUUUUGGUGAUUUGUUUGCUUGAGUUUCAGUUCUUUAAA ..(((((((........((((((.....))))))(((((((..((((((((.(.(((((.((((((........))))))...))))).).)))).)))))))))))...)))))))... ( -35.60) >DroYak_CAF1 14803 120 + 1 GCGAGGAGCACUUCCUGGCCAGCCUCCCGCUGGCAACUCAAUCGCGAUAAAGCCUCAGGUGAAUUAUAGUUAUUUGAUUUUGUUUUGGUGAUUUGUUUGCUUGAGUUUCAGUUCUUUAAA ..(((((((........((((((.....)))))).........((......))((((((..(((...((((((..((......))..)))))).)))..)))))).....)))))))... ( -35.00) >consensus GCGAGGAGCACUUCCUGGCCAGCCUCCCGCUGGCAACUCAAUCGCGAUAAAGCCCCAGGUGAAUUAUAGUUAUUUGAUUUUGUUUUGGUGAUUUGUUUGCUUGAGUUUCAGUUCUUUAAA ..(((((((........((((((.....))))))(((((((..((((((((.(.(((((.((((((........))))))...))))).).)))).)))))))))))...)))))))... (-34.88 = -34.64 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:56 2006