Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,753,608 – 6,753,718 |
Length | 110 |
Max. P | 0.607703 |
Location | 6,753,608 – 6,753,718 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 93.60 |
Mean single sequence MFE | -25.31 |
Consensus MFE | -23.73 |
Energy contribution | -23.73 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.94 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607703 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6753608 110 - 27905053 UAAAUAUUUAAGAGCCGGCAGAGAA-----AAUGUA--AAAAAAUGAAACGGAAAACACGGAAGACGAAGCCGGCGACGAAAAAGGUGCAAAGUGUCGCCCUCAGCGCUUGGCAAUC .............((((((......-----......--............(.....).(....).....))))))...........(((.((((((........)))))).)))... ( -23.90) >DroSim_CAF1 22171 110 - 1 UAAAUAUUUAAGAGCCGGCAGAGAA-----AAUGUA--AAAAAAUGAAACGGAAAACACGGAAGACGAAGCCGGCGACGAAAAAGGUGCAAAGUGUCGCCCUCAGCGCUUGGCAAUC .............((((((......-----......--............(.....).(....).....))))))...........(((.((((((........)))))).)))... ( -23.90) >DroYak_CAF1 14049 115 - 1 UAAAUAUUUAAGAGCCGGCUGAG--AUGAAAAUGAAAAAAAAAAUGAAACGGAAAACACGGAAGACGAAGCCGGCGACGAAAAAGGUGCAAAGUGUCGCCCUCAGCGCUUGGCAAUC .............((((((((((--.........................((......(....)......))(((((((..............)))))))))))))...)))).... ( -28.14) >consensus UAAAUAUUUAAGAGCCGGCAGAGAA_____AAUGUA__AAAAAAUGAAACGGAAAACACGGAAGACGAAGCCGGCGACGAAAAAGGUGCAAAGUGUCGCCCUCAGCGCUUGGCAAUC .............((((((...............................(.....).(....).....))))))...........(((.((((((........)))))).)))... (-23.73 = -23.73 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:51 2006