Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,751,364 – 6,751,483 |
Length | 119 |
Max. P | 0.756952 |
Location | 6,751,364 – 6,751,483 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.14 |
Mean single sequence MFE | -38.67 |
Consensus MFE | -34.62 |
Energy contribution | -34.88 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.90 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756952 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6751364 119 + 27905053 ACAGUUUUUAUUUUUU-UUGUUUCGCUUCCUUUUUGGCCACAAGUUGCGCGCUUGUUUGGCCAAGUUGAGAUCCCGGGAGGGCGGCAGUGGAUGCUCGGCCGAAGUUGUGCACAAUUUUC ................-((((((((((.((..(((((((((((((.....))))))..))))))).......(((....))).)).)))))).((.((((....)))).))))))..... ( -34.30) >DroSec_CAF1 15553 120 + 1 AAAGUUUUUUUUUUUUUGUGUUUCGCUUCCUUUUUGGCCACAAGUUGCGCGCUUGUUUGGCCAAGUUGAGAUCCCGGGAGGGCGGCAGUGGAUGCUCCGCCGAAGUUGUGCACAAUUUUC ...............((((((...((((((..(((((((((((((.....))))))..)))))))..)............(((((.(((....)))))))))))))...))))))..... ( -40.10) >DroSim_CAF1 19931 120 + 1 AAAGUUUUUUUUUUUUUGUGUUUCGCUUCCUUUUUGGCCACAAGUUGCGCGCUUGUUUGGCCAAGUUGAGAUCCCGGGAGGGCGGCAGUGGAUGCUCCGCCGAAGUUGUGCACAAUUUUC ...............((((((...((((((..(((((((((((((.....))))))..)))))))..)............(((((.(((....)))))))))))))...))))))..... ( -40.10) >DroYak_CAF1 11878 118 + 1 AAAGUUUUUUUUU--GUAUUUUUCGCUUCCUUUUUGGCCACAAGUUGCGCGCUUGUUUGGCCAAGUUGGGAUCUCGGGAGGGCGGCAGUGGAUGCUCCGCCGAAGUUGUGCACAAUUUUC .............--....((..((..((((.(((((((((((((.....))))))..)))))))..))))...))..))(((((.(((....))))))))(((((((....))))))). ( -40.20) >consensus AAAGUUUUUUUUUUUUUGUGUUUCGCUUCCUUUUUGGCCACAAGUUGCGCGCUUGUUUGGCCAAGUUGAGAUCCCGGGAGGGCGGCAGUGGAUGCUCCGCCGAAGUUGUGCACAAUUUUC ....................(..((..(((..(((((((((((((.....))))))..)))))))..).))...))..).(((((.(((....))))))))(((((((....))))))). (-34.62 = -34.88 + 0.25)
Location | 6,751,364 – 6,751,483 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.14 |
Mean single sequence MFE | -29.65 |
Consensus MFE | -25.34 |
Energy contribution | -25.65 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.87 |
Structure conservation index | 0.85 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6751364 119 - 27905053 GAAAAUUGUGCACAACUUCGGCCGAGCAUCCACUGCCGCCCUCCCGGGAUCUCAACUUGGCCAAACAAGCGCGCAACUUGUGGCCAAAAAGGAAGCGAAACAA-AAAAAAUAAAAACUGU .....((((((.(......(((((((((.....)))..(((....)))........))))))......).)))))).((((..((.....))..)))).....-................ ( -26.80) >DroSec_CAF1 15553 120 - 1 GAAAAUUGUGCACAACUUCGGCGGAGCAUCCACUGCCGCCCUCCCGGGAUCUCAACUUGGCCAAACAAGCGCGCAACUUGUGGCCAAAAAGGAAGCGAAACACAAAAAAAAAAAAACUUU .....(((((.....(((((((((........))))).(((....)))........((((((..(((((.......)))))))))))....)))).....)))))............... ( -31.50) >DroSim_CAF1 19931 120 - 1 GAAAAUUGUGCACAACUUCGGCGGAGCAUCCACUGCCGCCCUCCCGGGAUCUCAACUUGGCCAAACAAGCGCGCAACUUGUGGCCAAAAAGGAAGCGAAACACAAAAAAAAAAAAACUUU .....(((((.....(((((((((........))))).(((....)))........((((((..(((((.......)))))))))))....)))).....)))))............... ( -31.50) >DroYak_CAF1 11878 118 - 1 GAAAAUUGUGCACAACUUCGGCGGAGCAUCCACUGCCGCCCUCCCGAGAUCCCAACUUGGCCAAACAAGCGCGCAACUUGUGGCCAAAAAGGAAGCGAAAAAUAC--AAAAAAAAACUUU .....(((((.........(((((((......)).)))))....((...(((....((((((..(((((.......)))))))))))...)))..)).....)))--))........... ( -28.80) >consensus GAAAAUUGUGCACAACUUCGGCGGAGCAUCCACUGCCGCCCUCCCGGGAUCUCAACUUGGCCAAACAAGCGCGCAACUUGUGGCCAAAAAGGAAGCGAAACACAAAAAAAAAAAAACUUU ........(((.......((((((........))))))(((....))).(((....((((((..(((((.......)))))))))))...))).)))....................... (-25.34 = -25.65 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:42 2006