Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,750,236 – 6,750,494 |
Length | 258 |
Max. P | 0.828196 |
Location | 6,750,236 – 6,750,349 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.13 |
Mean single sequence MFE | -28.77 |
Consensus MFE | -22.01 |
Energy contribution | -21.82 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -2.02 |
Structure conservation index | 0.76 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522313 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6750236 113 + 27905053 ACACAUUCUGAAUGUUUUAUUAGAUUUGGGUGGAGUGAAAGUUUACCAGACAAAUUCACCUCCGAAAGAGGAUAU----AUGCGCAAAUGUGUAUCCCUAUCAGG---ACCAACCAAGUU ......................(((((((.(((.(((((.(((.....)))...))))).(((((.((.((((((----((........)))))))))).)).))---)))).))))))) ( -28.10) >DroSec_CAF1 14472 113 + 1 ACACAUUCUGAAUGUUUUAUUAGAUUUGGGUGGAGUGAAAGUUUAGCAGACAAAUUCACCUCCGAAAGAGGAUAU----AUGUGCAAAUGUGUAUUCCUAUCAGG---ACCAACCAAGUU ......................(((((((.(((.(((((.(((.....)))...))))).(((((.((.((((((----((((....)))))))))))).)).))---)))).))))))) ( -27.00) >DroSim_CAF1 18803 113 + 1 ACACAUUCUGAAUGUUUUAUUAGAUUUGGGUGGAGUGAAAGUUUAGCAGACAAAUUCACCUCCGAAAGAGGAUAU----AUGUGCAAAUGUGUAUCCCUAUCAGG---ACCAACCAAGUU ......................(((((((.(((.(((((.(((.....)))...))))).(((((.((.((((((----((((....)))))))))))).)).))---)))).))))))) ( -29.90) >DroYak_CAF1 10657 120 + 1 ACACAUUCUGAAUGUUUUAUUAGAUUUGGGUGGAGUGAAAGUUUACCAGACAAAUUCACCUCCGAAAGUGGAUAUACAUAUGCACAAAUGUGUAUCCCUAUCAGACCAACCAACCAAGUU ......................(((((((..((((((((.(((.....)))...)))).))))((.((.((((((((((........)))))))))))).))...........))))))) ( -30.10) >consensus ACACAUUCUGAAUGUUUUAUUAGAUUUGGGUGGAGUGAAAGUUUACCAGACAAAUUCACCUCCGAAAGAGGAUAU____AUGCGCAAAUGUGUAUCCCUAUCAGG___ACCAACCAAGUU ......................(((((((..((((((((.(((.....)))...)))).))))((.((.((((((....((......))..)))))))).))...........))))))) (-22.01 = -21.82 + -0.19)
Location | 6,750,349 – 6,750,454 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.44 |
Mean single sequence MFE | -41.45 |
Consensus MFE | -27.27 |
Energy contribution | -27.53 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.09 |
Mean z-score | -4.98 |
Structure conservation index | 0.66 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780564 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6750349 105 - 27905053 ACUGGCUUUAGCUCACCAAUGAGAA-------GGUGUUGGUUACCAUUCGGUAGC--------CAAUAUCUCUCUGGACAAAAUAACAAAAGUUGGCAAAUAAGCUAAAGUUGGCCACAG .(..(((((((((..(((..((((.-------(((((((((((((....))))))--------))))))))))))))......((((....)))).......)))))))))..)...... ( -41.90) >DroSec_CAF1 14585 105 - 1 ACUGGCUUUAGCCCACCAACGAGAA-------GGUGUUGGUUGCCAUUCGGUAGC--------CAAUAUCUCUCUGGACAAAAUAACAAAAGUUGGCAAAUAAGCUGAAGUUGGCCACAG .(..((((((((...(((((((((.-------(((((((((((((....))))))--------)))))))))))((..........))...))))).......))))))))..)...... ( -41.50) >DroSim_CAF1 18916 105 - 1 ACUGGCUUUAGCCCACCAACGAGAA-------GGUGUUGGUUACCAUUCGGUAGC--------CAAUAUCUCUCUGGACAAAAUAACAAAAGUUGGCAAAUAAGCUAAAGUUGGCCACAG .(..((((((((...(((((((((.-------(((((((((((((....))))))--------)))))))))))((..........))...))))).......))))))))..)...... ( -41.40) >DroYak_CAF1 10777 120 - 1 GCUGGCUUCGGCCCACAUACGAGAAGGUGGAAGGUGUUGGUUACCAUUGGGUAGCCGGGUAACCAAUAUCUCUCUGGACCAAAUAACAAAAGUUGGCAAAUAAGCUAAAGUUGGCCACAG ((..((((..((.............((((((((((((((((((((...((....)).)))))))))))))).)))..)))...((((....))))........))..))))..))..... ( -41.00) >consensus ACUGGCUUUAGCCCACCAACGAGAA_______GGUGUUGGUUACCAUUCGGUAGC________CAAUAUCUCUCUGGACAAAAUAACAAAAGUUGGCAAAUAAGCUAAAGUUGGCCACAG .(..((((((((...(((..((((........(((((((((((((....))))))........))))))))))))))......((((....))))........))))))))..)...... (-27.27 = -27.53 + 0.25)
Location | 6,750,389 – 6,750,494 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -37.31 |
Consensus MFE | -23.11 |
Energy contribution | -22.93 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.15 |
Mean z-score | -3.01 |
Structure conservation index | 0.62 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6750389 105 - 27905053 UUUGUUGGCAAAUGAAUUCCAAUUGCUGCACCGUGAAGUAACUGGCUUUAGCUCACCAAUGAGAA-------GGUGUUGGUUACCAUUCGGUAGC--------CAAUAUCUCUCUGGACA ..(((.(((((.((.....)).))))))))...((((((.....)))))).....(((..((((.-------(((((((((((((....))))))--------))))))))))))))... ( -35.10) >DroSec_CAF1 14625 105 - 1 UUUGUUGGCAAAUGAAUUCCAAUUGCUGCACCUCGAAGUAACUGGCUUUAGCCCACCAACGAGAA-------GGUGUUGGUUGCCAUUCGGUAGC--------CAAUAUCUCUCUGGACA ...(((((......((..(((.(((((.........))))).)))..))......)))))((((.-------(((((((((((((....))))))--------)))))))))))...... ( -37.30) >DroSim_CAF1 18956 105 - 1 UUUGUUGGCAAAUGAAUUCCAAUUGCUGCACCUCGAAGUAACUGGCUUUAGCCCACCAACGAGAA-------GGUGUUGGUUACCAUUCGGUAGC--------CAAUAUCUCUCUGGACA ...(((((......((..(((.(((((.........))))).)))..))......)))))((((.-------(((((((((((((....))))))--------)))))))))))...... ( -37.30) >DroYak_CAF1 10817 120 - 1 UUUGUUGGCAAAUGAAUUCCAAUUGCUGCAUUUCGAAGGAGCUGGCUUCGGCCCACAUACGAGAAGGUGGAAGGUGUUGGUUACCAUUGGGUAGCCGGGUAACCAAUAUCUCUCUGGACC ..(((.(((((.((.....)).))))))))(((((........(((....)))......))))).((((((((((((((((((((...((....)).)))))))))))))).)))..))) ( -39.54) >consensus UUUGUUGGCAAAUGAAUUCCAAUUGCUGCACCUCGAAGUAACUGGCUUUAGCCCACCAACGAGAA_______GGUGUUGGUUACCAUUCGGUAGC________CAAUAUCUCUCUGGACA ...(((((....((((..(((.(((((.........))))).))).)))).....)))))((((........(((((((((((((....))))))........)))))))))))...... (-23.11 = -22.93 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:40 2006