Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 946,202 – 946,301 |
Length | 99 |
Max. P | 0.631925 |
Location | 946,202 – 946,301 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 83.01 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -19.54 |
Energy contribution | -20.16 |
Covariance contribution | 0.62 |
Combinations/Pair | 1.05 |
Mean z-score | -1.77 |
Structure conservation index | 0.65 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 946202 99 + 27905053 AGAAUCAGAAUCUGAAUCAGUAUCUGCAGCUGAAGCUGAAGCUGAAGCUGAAGCUAUACGCUGCAGUUGAAUGCUGAAUGUAGAAUG--------------CUGCUGCGAUGC ...(((....((((..((((((((((((((((.((((..(((....)))..)))).)).)))))))....)))))))...))))..(--------------(....))))).. ( -34.80) >DroSec_CAF1 35242 93 + 1 AGAAUCAGAAUCAGAAUGAGUAUCUGCAGCUGAAGCUG------AGGCCGAAGCUAUGCGCUGCAGUUGAAUGCUGAAUGUUGAAUG--------------CUGCUGCGAUGC ....((((..((((.((...((.(((((((...((((.------.......))))....))))))).)).)).))))...)))).((--------------(....))).... ( -24.80) >DroSim_CAF1 41255 93 + 1 AGAAUCAGAAUCAGAAUCAGUAUCUGCAGCUGAAGCUG------AGGCCGAAGCUAUGCGCUGCAGUUGAAUGCUGAAUGUUGAAUG--------------CUGCUGCGAUGC ...(((....((((..((((((((((((((...((((.------.......))))....)))))))....)))))))...))))..(--------------(....))))).. ( -28.30) >DroEre_CAF1 35852 107 + 1 AGAAUCGGAAUCAGAAUCAGUAUCUGAAGCUGAAGCUG------ACGCUGAAGCUGUGCACUGCAGUUGAAUGCCGAGUGUUGAAUGCUGAAUGGAAAAUGCUGGUGCGCUGC ....((((..((((..(((((.......)))))..)))------)..)))).((.((((((((((......)))..((((((.....((....))..))))))))))))).)) ( -32.50) >consensus AGAAUCAGAAUCAGAAUCAGUAUCUGCAGCUGAAGCUG______AGGCCGAAGCUAUGCGCUGCAGUUGAAUGCUGAAUGUUGAAUG______________CUGCUGCGAUGC ..........((((..((((((((((((((...((((..............))))....)))))))....)))))))...))))............................. (-19.54 = -20.16 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:30 2006