Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 217,342 – 217,433 |
Length | 91 |
Max. P | 0.983127 |
Location | 217,342 – 217,433 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 89.67 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -24.24 |
Energy contribution | -24.56 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.11 |
Mean z-score | -2.21 |
Structure conservation index | 0.83 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.983127 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 217342 91 - 27905053 UAAAUCACGUGGUGUCAUUAGUAUCUUCUUCGGUGCCUUGACUCUGAGUACUGUUAGUUGCAUCGACUGUGGUUGUGAUGUAGCUGACAUC ......((..((.((((...(((((......)))))..)))).))..))..(((((((((((((.((.......))))))))))))))).. ( -28.30) >DroSec_CAF1 9538 91 - 1 UAAAUCACGUGGUGUCAUCAGCAUCUUCUUCGGUGCCUUGACUGUGAGUAUUGUUGGUUGCAUCGACUGUGGGUGUGAUGUAGCUGACAUC ....(((((....((((...(((((......)))))..)))))))))....(((..(((((((((((.....)).)))))))))..))).. ( -31.00) >DroSim_CAF1 10543 91 - 1 UAAAUCACGUGGUGUCAUCAGCAUCUUCUCCGGUGCCUUGACUCUGAGUAUUGUUGGUUGCAUCGACUGUGGGUGUGAUGUAGCUGACAUC ......((..((.((((...(((((......)))))..)))).))..))..(((..(((((((((((.....)).)))))))))..))).. ( -30.20) >DroEre_CAF1 13071 91 - 1 UAAAUCACGUGGUAUCAUCAGCCUCGUCUUCAUCGCCUUGAUACUGAAUAAUGUUAGUUGCAUCGACUGUGGGUGUGAUGUAGCUGACAUC ..........(((((((...((............))..))))))).....(((((((((((((((((.....)).))))))))))))))). ( -26.10) >DroYak_CAF1 30024 91 - 1 UAAAUCACGUGGUAUCAUCAGCCUCGCCUUCGGCGCCUUGAUACUGAGUAAGGUUAGUUGCAUCGACUGUCGGUGUGAUGUAGCUGACAUC ......((..(((((((...(((........)))....)))))))..))...(((((((((((((((.....)).)))))))))))))... ( -31.30) >consensus UAAAUCACGUGGUGUCAUCAGCAUCUUCUUCGGUGCCUUGACUCUGAGUAAUGUUAGUUGCAUCGACUGUGGGUGUGAUGUAGCUGACAUC ......((.(((.((((...(((((......)))))..)))).))).))...((((((((((((.((.......))))))))))))))... (-24.24 = -24.56 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:32 2006