Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,749,210 – 6,749,325 |
Length | 115 |
Max. P | 0.650864 |
Location | 6,749,210 – 6,749,325 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.74 |
Mean single sequence MFE | -37.13 |
Consensus MFE | -35.90 |
Energy contribution | -36.15 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.97 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650864 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6749210 115 - 27905053 GCUCCUGCAAUGACCCUAAUAACUGUCUACGGGCAUGUUAAGUGUCAGCGCCGACAUGUCCUGUCAUGUCUGCACUGGGCCUCUGACCCUCCGCAGGUCCUUUGAGUGC-----UUAUAU ......((..((((.((..((((((((....)))).)))))).))))..)).((((((......)))))).(((((((((((.((......)).))))))....)))))-----...... ( -38.00) >DroSec_CAF1 13417 115 - 1 GCUCCUGCAAUGACCCUAAUAACUGUCUACGGGCAUGUUAAGUGUCAGCGCCGACAUGUCCUGUCAUGUCUGCACUGGGCCUCUGACCCUCCGCAGGUCCUUUGAGUGC-----UUAUGU ......((..((((.((..((((((((....)))).)))))).))))..)).((((((......)))))).(((((((((((.((......)).))))))....)))))-----...... ( -38.00) >DroSim_CAF1 17746 115 - 1 GCUCCUGCAAUGACCCUAAUAACUGUCUACGGGCAUGUUAAGUGUCAGCGCCGACAUGUCCUGUCAUGUCUGCACUGGGCCUCUGACCCUCCGCAGGUCCUUUGAGUAC-----UUAUGU ((((..((..((((.((..((((((((....)))).)))))).))))))((.((((((......)))))).))...((((((.((......)).))))))...))))..-----...... ( -37.50) >DroYak_CAF1 9564 120 - 1 GCUCCUGCAAUGACCCUAAUAACUGUCUACGGGCAUGUUAAGUGUCAGCGCCGACAUGUCCUGUCAUGUCUGCACUGGGCCUCUGACCCUCCGCAUGUCCUGUGAGUGUGUCCUUUAUGU ((((..(((..(((..........)))...((((((((..((.(((((.(((((((((......)))))).......)))..))))).))..)))))))))))))))............. ( -35.01) >consensus GCUCCUGCAAUGACCCUAAUAACUGUCUACGGGCAUGUUAAGUGUCAGCGCCGACAUGUCCUGUCAUGUCUGCACUGGGCCUCUGACCCUCCGCAGGUCCUUUGAGUGC_____UUAUGU ((((..((..((((.((..((((((((....)))).)))))).))))))((.((((((......)))))).))...((((((.((......)).))))))...))))............. (-35.90 = -36.15 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:36 2006