Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,748,742 – 6,748,861 |
Length | 119 |
Max. P | 0.712802 |
Location | 6,748,742 – 6,748,861 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.90 |
Mean single sequence MFE | -29.55 |
Consensus MFE | -24.94 |
Energy contribution | -24.88 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.12 |
Mean z-score | -1.64 |
Structure conservation index | 0.84 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6748742 119 - 27905053 UCGGAGAAGUCCUUUGCUGGGUAAAAA-AAAAAUGUCAAAUUGCGCCUAAAAGCAGACCGCAAUAUUUCGUGAGCAGGAAAAGCUGUGGUAGAGGAAAAAAAAAACUAUUGCCUGGCGAU ..(((....))).((((..(((((...-............((((........))))((((((.(.((((.(....).)))).).))))))..................)))))..)))). ( -28.90) >DroSec_CAF1 12980 118 - 1 UCAGAAAAGUCCUUUGCUGGGUAAAAA--AAAAUGUCAAAUUGCGCCUAAAAGCAGACCGCAAUAUUUCGUGGGCAGGAAAGGCGGUGGUAGAGGAAAAGAAAAACUAUUGCCUGGCGAU .............((((..(((((...--...........((((........))))(((((....((((.(....).)))).))))).....................)))))..)))). ( -28.50) >DroSim_CAF1 17293 120 - 1 UCAGAGAAGUCCUUUGCUGGGUAAAAAAAAAAAUGUCAAAUUGCGCCUAAAAGCAGACCGCAAUAUUUCGUGGGCAGGAAAGGCGGCGGAAGAGGAAAAGAAAAACUAUUGCCUGGCGAU .............((((..(((((...........((...((.((((..........((((........))))((.......)))))).))...))............)))))..)))). ( -29.40) >DroYak_CAF1 9100 115 - 1 UCGCAAAAGUCCUUCGCUGUGUAAA-----AAAUGUCAAAUUGCGCCUAAAAGCAGACCGCAAUAUUUUGUGGGCAGGAAAAGCGGUGGUGGAGGAAAAGAAAAACUAUUGCCUGGCGAU ((((....((..(((.((((.....-----..........((((........)))).((((((....)))))))))))))..))((..((((.............))))..))..)))). ( -31.42) >consensus UCAGAAAAGUCCUUUGCUGGGUAAAAA__AAAAUGUCAAAUUGCGCCUAAAAGCAGACCGCAAUAUUUCGUGGGCAGGAAAAGCGGUGGUAGAGGAAAAGAAAAACUAUUGCCUGGCGAU .............(((((((((((................((((........))))(((((....((((.(....).))))....)))))..................))))))))))). (-24.94 = -24.88 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:34:35 2006